4.5 Review

Protein and peptide fractionation, enrichment and depletion: Tools for the complex proteome

Related references

Note: Only part of the references are listed.
Article Medical Laboratory Technology

Nipple Aspirate Fluid Proteome of Healthy Females and Patients with Breast Cancer

Maria P. Pavlou et al.

CLINICAL CHEMISTRY (2010)

Article Biochemical Research Methods

High-abundance protein depletion: Comparison of methods for human plasma biomarker discovery

Veronika Polaskova et al.

ELECTROPHORESIS (2010)

Review Chemistry, Analytical

Multidimensional chromatography coupled to mass spectrometry in analysing complex proteomics samples

Peter Horvatovich et al.

JOURNAL OF SEPARATION SCIENCE (2010)

Article Biochemical Research Methods

A gel-free approach in vascular smooth muscle cell proteome: perspectives for a better insight into activation

Silvia Rocchiccioli et al.

PROTEOME SCIENCE (2010)

Article Biochemical Research Methods

Immunodepletion of high abundance proteins coupled on-line with reversed-phase liquid chromatography: A two-dimensional LC sample enrichment and fractionation technique for mammalian proteomics

Nicholas A. Cellar et al.

JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES (2009)

Article Biochemistry & Molecular Biology

Quantitative Proteomics of the Tonoplast Reveals a Role for Glycolytic Enzymes in Salt Tolerance

Bronwyn J. Barkla et al.

PLANT CELL (2009)

Article Medical Laboratory Technology

Heparin chromatography to deplete high-abundance proteins for serum proteomics

Ting Lei et al.

CLINICA CHIMICA ACTA (2008)

Article Biochemical Research Methods

Sample complexity reduction for two-dimensional electrophoresis using solution isoelectric focusing prefractionation

Matthew R. Richardson et al.

ELECTROPHORESIS (2008)

Article Biochemical Research Methods

Selection of pH-related parameters in ion-exchange chromatography using pH-gradient operations

Tangir Ahamed et al.

JOURNAL OF CHROMATOGRAPHY A (2008)

Article Biochemical Research Methods

Protein separations with induced pH gradients using cation-exchange chromatographic columns containing weak acid groups

Timothy M. Pabst et al.

JOURNAL OF CHROMATOGRAPHY A (2008)

Article Biochemical Research Methods

Micro-proteome analysis using micro-chromatofocusing in intact protein separations

Hyeyeung Kim et al.

JOURNAL OF CHROMATOGRAPHY A (2008)

Article Biochemical Research Methods

Combining protein-based IMAC, peptide-based IMAC, and MudPIT for efficient phosphoproteomic analysis

Greg T. Cantin et al.

JOURNAL OF PROTEOME RESEARCH (2008)

Article Biochemical Research Methods

Online automated in vivo zebrafish phosphoproteomics:: From large-scale analysis down to a single embryo

Simone Lemeer et al.

JOURNAL OF PROTEOME RESEARCH (2008)

Article Biochemical Research Methods

TiO2-based phosphoproteomic analysis of the plasma membrane and the effects of phosphatase inhibitor treatment

Tine E. Thingholm et al.

JOURNAL OF PROTEOME RESEARCH (2008)

Article Biochemical Research Methods

Shotgun proteomic analysis of cerebrospinal fluid using off-gel electrophoresis as the first-dimension separation

Lashanda N. Waller et al.

JOURNAL OF PROTEOME RESEARCH (2008)

Article Biochemical Research Methods

A pI-based protein fractionation method using solid-state buffers

Frederic Fortis et al.

JOURNAL OF PROTEOMICS (2008)

Article Biochemical Research Methods

The ProteoMiner in the proteomic arena: A non-depleting tool for discovering low-abundance species

Egisto Boschetti et al.

JOURNAL OF PROTEOMICS (2008)

Review Spectroscopy

THE PROTEOMINER AND THE FORTYNINERS: SEARCHING FOR GOLD NUGGETS IN THE PROTEOMIC ARENA

Pier Giorgio Righetti et al.

MASS SPECTROMETRY REVIEWS (2008)

Article Biochemical Research Methods

Peptide enrichment and protein fractionation using selective electrophoresis

Linda Ly et al.

PROTEOMICS (2008)

Review Biochemical Research Methods

Biotinylation reagents for the study of cell surface proteins

Giuliano Elia

PROTEOMICS (2008)

Article Biochemical Research Methods

Phosphoproteomic analysis of Leishmania donovani pro- and amastigote stages

Miguel A. Morales et al.

PROTEOMICS (2008)

Article Biochemical Research Methods

Characterization of the renal cyst fluid proteome in autosomal dominant polycystic kidney disease (ADPKD) patients

Xianyin Lai et al.

PROTEOMICS CLINICAL APPLICATIONS (2008)

Article Chemistry, Analytical

Cascaded free-flow isoelectric focusing for improved focusing speed and resolution

Jacob W. Albrecht et al.

ANALYTICAL CHEMISTRY (2007)

Article Biochemical Research Methods

Proteomic identification of endothelial proteins isolated in situ from atherosclerotic aorta via systemic perfusion

Jiang Wu et al.

JOURNAL OF PROTEOME RESEARCH (2007)

Article Biochemical Research Methods

Two-dimensional separation of human plasma proteins using iterative free-flow electrophoresis

Jonas Grossmann et al.

PROTEOMICS (2007)

Article Medical Laboratory Technology

Quality control of serum albumin, depletion for proteomic analysis

Nitin Seam et al.

CLINICAL CHEMISTRY (2007)

Article Chemistry, Analytical

Microfluidic high-resolution free-flow isoelectric focusing

Dietrich Kohlheyer et al.

ANALYTICAL CHEMISTRY (2007)

Article Biochemical Research Methods

Proteomic analysis of human blood serum using peptide library beads

Lau Sennels et al.

JOURNAL OF PROTEOME RESEARCH (2007)

Article Biochemical Research Methods

pH-gradient ion-exchange chromatography: An analytical tool for design and optimization of protein separations

Tangir Ahamed et al.

JOURNAL OF CHROMATOGRAPHY A (2007)

Article Biochemical Research Methods

Immobilized zirconium ion affinity chromatography for specific enrichment of phosphopeptides in phosphoproteome analysis

Shun Feng et al.

MOLECULAR & CELLULAR PROTEOMICS (2007)

Article Biochemical Research Methods

Proteomic analysis of plasma membrane and secretory vesicles from human neutrophils

Deepa Jethwaney et al.

PROTEOME SCIENCE (2007)

Review Cell & Tissue Engineering

Concise review: Trends in stem cell proteomics

Hossein Baharvand et al.

STEM CELLS (2007)

Article Biochemical Research Methods

Improved method for proteome mapping of the liver by 2-DE MALDI-TOF MS

Giuseppe Gazzana et al.

JOURNAL OF PROTEOME RESEARCH (2007)

Article Biochemical Research Methods

Gel-free IEF in a membrane-sealed multicompartment cell for proteome prefractionation

Pier Giorgio Righetti et al.

ELECTROPHORESIS (2007)

Article Biochemical Research Methods

Liquid chromatography mass spectrometry profiling of histones

Xiaodan Su et al.

JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES (2007)

Article Biochemical Research Methods

Rat plasma proteomics: Effects of abundant protein depletion on proteomic analysis

Thomas Linke et al.

JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES (2007)

Article Biochemical Research Methods

Enrichment of the basic/cationic urinary proteome using ion exchange chromatography and batch adsorption

Visith Thongboonkerd et al.

JOURNAL OF PROTEOME RESEARCH (2007)

Review Biochemistry & Molecular Biology

Sherlock Holmes and the proteome - a detective story

Pier Giorgio Righetti et al.

FEBS JOURNAL (2007)

Article Biochemical Research Methods

Evaluation of the impact of some experimental procedures on different phosphopeptide enrichment techniques

Soren S. Jensen et al.

RAPID COMMUNICATIONS IN MASS SPECTROMETRY (2007)

Article Biochemical Research Methods

Contribution of protein fractionation to depth of analysis of the serum and plasma proteomes

Vitor Faca et al.

JOURNAL OF PROTEOME RESEARCH (2007)

Article Chemistry, Analytical

Multiplexed proteomic reactor for the processing of proteomic samples

Weimin Hou et al.

ANALYTICAL CHEMISTRY (2007)

Article Biochemical Research Methods

The Medicago truncatula small protein proteome and peptidome

Kerong Zhang et al.

JOURNAL OF PROTEOME RESEARCH (2006)

Review Biochemistry & Molecular Biology

Strategies for analysis of glycoprotein glycosylation

Hildegard Geyer et al.

BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS (2006)

Review Biochemical Research Methods

Advances and challenges in liquid chromatography-mass spectrometry-based proteomics profiling for clinical applications

Wei-Jun Qian et al.

MOLECULAR & CELLULAR PROTEOMICS (2006)

Review Biochemical Research Methods

Protein stains for proteomic applications:: Which, when, why?

Ingrid Miller et al.

PROTEOMICS (2006)

Article Biochemical Research Methods

Efficient fractionation and improved protein identification by peptide OFFGEL electrophoresis

Patric Hoerth et al.

MOLECULAR & CELLULAR PROTEOMICS (2006)

Article Biochemical Research Methods

Optimized peptide separation and identification for mass spectrometry based proteomics via free-flow electrophoresis

Johan Malmstrom et al.

JOURNAL OF PROTEOME RESEARCH (2006)

Review Biochemical Research Methods

Protein Equalizer™ Technology:: The quest for a democratic proteome

Pier Giorgio Righetti et al.

PROTEOMICS (2006)

Article Biochemical Research Methods

Depletion efficiency and recovery of trace markers from a multiparameter immunodepletion column

Joachim Brand et al.

PROTEOMICS (2006)

Article Biochemical Research Methods

Different immunoaffinity fractionation strategies to characterize the human plasma proteome

Yan Gong et al.

JOURNAL OF PROTEOME RESEARCH (2006)

Article Biochemical Research Methods

Depletion of abundant proteins from non-human primate serum for biomarker studies

WM Freeman et al.

PROTEOMICS (2006)

Article Biochemical Research Methods

Highly selective enrichment of phosphorylated peptides using titanium dioxide

Tine E. Thingholm et al.

NATURE PROTOCOLS (2006)

Review Biochemical Research Methods

Sample enrichment techniques in capillary electrophoresis: Focus on peptides and proteins

Maria Rowena N. Monton et al.

JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES (2006)

Review Biochemical Research Methods

Capillary electrophoresis-based separation techniques for the analysis of proteins

Yu-Fen Huang et al.

ELECTROPHORESIS (2006)

Review Microbiology

Technologies for bacterial surface proteomics

SJ Cordwell

CURRENT OPINION IN MICROBIOLOGY (2006)

Review Biochemical Research Methods

Gel-based versus gel-free proteomics: A review

G Baggerman et al.

COMBINATORIAL CHEMISTRY & HIGH THROUGHPUT SCREENING (2005)

Article Biochemical Research Methods

Protein identification assisted by the prediction of retention time in liquid chromatography/tandem mass spectrometry

Y Wang et al.

JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES (2005)

Article Biochemical Research Methods

Exploring the hidden human urinary proteome via ligand library beads

A Castagna et al.

JOURNAL OF PROTEOME RESEARCH (2005)

Article Chemistry, Analytical

Ultrahigh-throughput proteomics using fast RPLC separations with ESI-MS/MS

YF Shen et al.

ANALYTICAL CHEMISTRY (2005)

Article Biochemical Research Methods

Differences among techniques for high-abundant protein depletion

N Zolotarjova et al.

PROTEOMICS (2005)

Article Biochemical Research Methods

Highly selective enrichment of phosphorylated peptides from peptide mixtures using titanium dioxide microcolumns

MR Larsen et al.

MOLECULAR & CELLULAR PROTEOMICS (2005)

Review Biochemical Research Methods

The development of the DIGE system: 2D fluorescence difference gel analysis technology

R Marouga et al.

ANALYTICAL AND BIOANALYTICAL CHEMISTRY (2005)

Review Biochemical Research Methods

Combining capillary electrophoresis with mass spectrometry for applications in proteomics

DC Simpson et al.

ELECTROPHORESIS (2005)

Article Biochemical Research Methods

Comparison of chromatographic ion-exchange resins - IV. Strong and weak cation-exchange resins and heparin resins

A Staby et al.

JOURNAL OF CHROMATOGRAPHY A (2005)

Article Biochemical Research Methods

Proteomics analysis of prefractionated human lumbar cerebrospinal fluid

XL Yuan et al.

PROTEOMICS (2005)

Review Biochemical Research Methods

Prefractionation techniques in proteome analysis: The mining tools of the third millennium

PG Righetti et al.

ELECTROPHORESIS (2005)

Review Biochemical Research Methods

Comprehensive proteome analysis by chromatographic protein prefractionation

P Lescuyer et al.

ELECTROPHORESIS (2004)

Article Biotechnology & Applied Microbiology

Direct proteomic mapping of the lung microvascular endothelial cell surface in vivo and in cell culture

E Durr et al.

NATURE BIOTECHNOLOGY (2004)

Article Biochemical Research Methods

Mining the human cerebrospinal fluid proteome by immunodepletion and shotgun mass spectrometry

G Maccarrone et al.

ELECTROPHORESIS (2004)

Review Biochemical Research Methods

Current two-dimensional electrophoresis technology for proteomics

A Görg et al.

PROTEOMICS (2004)

Article Biochemical Research Methods

Multidimensional proteome analysis of human mammary epithelial cells

JM Jacobs et al.

JOURNAL OF PROTEOME RESEARCH (2004)

Article Biochemical Research Methods

Multidimensional nano-HPLC for analysis of protein complexes

Y Wagner et al.

JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY (2003)

Article Biochemical Research Methods

Two-dimensional nano-liquid chromatography-mass spectrometry system for applications in proteomics

E Nägele et al.

JOURNAL OF CHROMATOGRAPHY A (2003)

Article Biochemical Research Methods

Prefractionation techniques in proteome analysis

PG Righetti et al.

PROTEOMICS (2003)

Article Chemistry, Analytical

Fractionation of cytosolic proteins on an immobilized heparin column

K Shefcheck et al.

ANALYTICAL CHEMISTRY (2003)

Review Genetics & Heredity

Proteomics: the first decade and beyond

SD Patterson et al.

NATURE GENETICS (2003)

Review Biotechnology & Applied Microbiology

Proteomic analysis of post-translational modifications

M Mann et al.

NATURE BIOTECHNOLOGY (2003)

Article Biochemical Research Methods

Protein fractionation in a multicompartment device using Off-Gel (TM) isoelectric focusing

PE Michel et al.

ELECTROPHORESIS (2003)

Review Biochemical Research Methods

Capillary electrophoresis - mass spectrometry: 15 years of developments and applications

P Schmitt-Kopplin et al.

ELECTROPHORESIS (2003)

Article Biochemical Research Methods

Enhanced analysis of human breast cancer proteomes using micro-scale solution isoelectrofocusing combined with high resolution 1-D and 2-D gels

X Zuo et al.

JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES (2002)

Review Biotechnology & Applied Microbiology

Trends in mass spectrometry instrumentation for proteomics

RD Smith

TRENDS IN BIOTECHNOLOGY (2002)

Article Biochemical Research Methods

Toward a human blood serum proteome - Analysis by multidimensional separation coupled with mass spectrometry

JN Adkins et al.

MOLECULAR & CELLULAR PROTEOMICS (2002)

Review Biochemical Research Methods

The human plasma proteome - History, character, and diagnostic prospects

NL Anderson et al.

MOLECULAR & CELLULAR PROTEOMICS (2002)

Review Biochemical Research Methods

Detection technologies in proteome analysis

WF Patton

JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES (2002)

Review Biochemical Research Methods

Proteomic tools for biomedicine

VC Wasinger et al.

JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES (2002)

Article Biotechnology & Applied Microbiology

Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae

SB Ficarro et al.

NATURE BIOTECHNOLOGY (2002)

Article Chemistry, Analytical

An automated multidimensional protein identification technology for shotgun proteomics

DA Wolters et al.

ANALYTICAL CHEMISTRY (2001)

Article Biochemical Research Methods

Proteomics: the move to mixtures

JM Peng et al.

JOURNAL OF MASS SPECTROMETRY (2001)

Article Biochemistry & Molecular Biology

Changes in the levels of low-abundance brain proteins induced by kainic acid

K Krapfenbauer et al.

EUROPEAN JOURNAL OF BIOCHEMISTRY (2001)

Article Biotechnology & Applied Microbiology

Large-scale analysis of the yeast proteome by multidimensional protein identification technology

MP Washburn et al.

NATURE BIOTECHNOLOGY (2001)

Article Chemistry, Analytical

High-efficiency capillary isoelectric focusing of peptides

YF Shen et al.

ANALYTICAL CHEMISTRY (2000)