Related references
Note: Only part of the references are listed.SAINT: probabilistic scoring of affinity purification-mass spectrometry data
Hyungwon Choi et al.
NATURE METHODS (2011)
Refinements to Label Free Proteome Quantitation: How to Deal with Peptides Shared by Multiple Proteins
Ying Zhang et al.
ANALYTICAL CHEMISTRY (2010)
RNA-Seq gene expression estimation with read mapping uncertainty
Bo Li et al.
BIOINFORMATICS (2010)
On the beta-binomial model for analysis of spectral count data in label-free tandem mass spectrometry-based proteomics
Thang V. Pham et al.
BIOINFORMATICS (2010)
PepC: proteomics software for identifying differentially expressed proteins based on spectral counting
N. L. Heinecke et al.
BIOINFORMATICS (2010)
Role of spectral counting in quantitative proteomics
Deborah H. Lundgren et al.
EXPERT REVIEW OF PROTEOMICS (2010)
Mass Spectrometry-Based Label-Free Quantitative Proteomics
Wenhong Zhu et al.
JOURNAL OF BIOMEDICINE AND BIOTECHNOLOGY (2010)
In-Depth Proteomic Analyses of Direct Expressed Prostatic Secretions
Richard R. Drake et al.
JOURNAL OF PROTEOME RESEARCH (2010)
Comparative Shotgun Proteomics Using Spectral Count Data and Quasi-Likelihood Modeling
Ming Li et al.
JOURNAL OF PROTEOME RESEARCH (2010)
A survey of computational methods and error rate estimation procedures for peptide and protein identification in shotgun proteomics
Alexey I. Nesvizhskii
JOURNAL OF PROTEOMICS (2010)
Analysis of protein complexes through model-based biclustering of label-free quantitative AP-MS data
Hyungwon Choi et al.
MOLECULAR SYSTEMS BIOLOGY (2010)
Protein and gene model inference based on statistical modeling in k-partite graphs
Sarah Gerster et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
ReSASC: A resampling-based algorithm to determine differential protein expression from spectral count data
Kristina M. Little et al.
PROTEOMICS (2010)
Scaffold: A bioinformatic tool for validating MS/MS-based proteomic studies
Brian C. Searle
PROTEOMICS (2010)
A guided tour of the Trans-Proteomic Pipeline
Eric W. Deutsch et al.
PROTEOMICS (2010)
A Global Protein Kinase and Phosphatase Interaction Network in Yeast
Ashton Breitkreutz et al.
SCIENCE (2010)
Statistical inferences for isoform expression in RNA-Seq
Hui Jiang et al.
BIOINFORMATICS (2009)
Estimating accuracy of RNA-Seq and microarrays with proteomics
Xing Fu et al.
BMC GENOMICS (2009)
A Bayesian Approach to Protein Inference Problem in Shotgun Proteomics
Yong Fuga Li et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2009)
Network-assisted protein identification and data interpretation in shotgun proteomics
Jing Li et al.
MOLECULAR SYSTEMS BIOLOGY (2009)
An embryonic stem cell chromatin remodeling complex, esBAF, is essential for embryonic stem cell self-renewal and pluripotency
Lena Ho et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
PatternLab for proteomics: a tool for differential shotgun proteomics
Paulo C. Carvalho et al.
BMC BIOINFORMATICS (2008)
Significance Analysis of Spectral Count Data in Label-free Shotgun Proteomics
Hyungwon Choi et al.
MOLECULAR & CELLULAR PROTEOMICS (2008)
Sorting Signals, N-Terminal Modifications and Abundance of the Chloroplast Proteome
Boris Zybailov et al.
PLOS ONE (2008)
Statistical similarities between transcriptomics and quantitative shotgun proteomics data
Norman Pavelka et al.
MOLECULAR & CELLULAR PROTEOMICS (2008)
Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry
Joshua E. Elias et al.
NATURE METHODS (2007)
Statistical analysis of membrane proteome expression changes in Saccharomyces cerevisiae
Boris Zybailov et al.
JOURNAL OF PROTEOME RESEARCH (2006)
Comparison of label-free methods for quantifying human proteins by shotgun proteomics
WM Old et al.
MOLECULAR & CELLULAR PROTEOMICS (2005)
Interpretation of shotgun proteomic data - The protein inference problem
AI Nesvizhskii et al.
MOLECULAR & CELLULAR PROTEOMICS (2005)
A model for random sampling and estimation of relative protein abundance in shotgun proteomics
HB Liu et al.
ANALYTICAL CHEMISTRY (2004)
A statistical model for identifying proteins by tandem mass spectrometry
AI Nesvizhskii et al.
ANALYTICAL CHEMISTRY (2003)
Protein pathway and complex clustering of correlated mRNA and protein expression analyses in Saccharomyces cerevisiae
MP Washburn et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search
A Keller et al.
ANALYTICAL CHEMISTRY (2002)
Analysis of mRNA expression and protein abundance data: an approach for the comparison of the enrichment of features in the cellular population of proteins and transcripts
D Greenbaum et al.
BIOINFORMATICS (2002)
Share Paper
