4.3 Article

Evaluation of residue-residue contact predictions in CASP9

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

Multibody coarse-grained potentials for native structure recognition and quality assessment of protein models

Pawel Gniewek et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2011)

Article Biochemistry & Molecular Biology

CASP9 target classification

Lisa N. Kinch et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2011)

Article Biochemistry & Molecular Biology

CASP9 results compared to those of previous CASP experiments

Andriy Kryshtafovych et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2011)

Article Biochemistry & Molecular Biology

Improving Protein Structure Prediction Using Multiple Sequence-Based Contact Predictions

Sitao Wu et al.

STRUCTURE (2011)

Article Biochemical Research Methods

I-TASSER: a unified platform for automated protein structure and function prediction

Ambrish Roy et al.

NATURE PROTOCOLS (2010)

Article Biochemistry & Molecular Biology

NNcon: improved protein contact map prediction using 2D-recursive neural networks

Allison N. Tegge et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Biochemistry & Molecular Biology

SAM-T08, HMM-based protein structure prediction

Kevin Karplus

NUCLEIC ACIDS RESEARCH (2009)

Article Biochemistry & Molecular Biology

Assessment of domain boundary predictions and the prediction of intramolecular contacts in CASP8

Iakes Ezkurdia et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2009)

Article Biochemistry & Molecular Biology

Prediction of global and local quality of CASP8 models by MULTICOM series

Jianlin Cheng et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2009)

Article Biochemistry & Molecular Biology

I-TASSER: Fully automated protein structure prediction in CASP8

Yang Zhang

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2009)

Article Computer Science, Artificial Intelligence

Prediction of topological contacts in proteins using learning classifier systems

Michael Stout et al.

SOFT COMPUTING (2009)

Article Biochemical Research Methods

Using inferred residue contacts to distinguish between correct and incorrect protein models

Christopher S. Miller et al.

BIOINFORMATICS (2008)

Article Biochemical Research Methods

Prediction of recursive convex hull class assignments for protein residues

Michael Stout et al.

BIOINFORMATICS (2008)

Article Biochemical Research Methods

FT-COMAR: fault tolerant three-dimensional structure reconstruction from protein contact maps

Marco Vassura et al.

BIOINFORMATICS (2008)

Article Biochemistry & Molecular Biology

Predicting key long-range interaction sites by B-factors

Peng Chen et al.

PROTEIN AND PEPTIDE LETTERS (2008)

Article Biochemical Research Methods

Improved residue contact prediction using support vector machines and a large feature set

Jianlin Cheng et al.

BMC BIOINFORMATICS (2007)

Article Biochemistry & Molecular Biology

Template-based modeling and free modeling by I-TASSER in CASP7

Yang Zhang

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2007)

Article Biochemistry & Molecular Biology

Contact prediction using mutual information and neural nets

George Shackelford et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2007)

Article Biochemistry & Molecular Biology

Assessment of intramolecular contact predictions for CASP7

Jose M. G. Izarzugaza et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2007)

Article Biochemistry & Molecular Biology

A pair-to-pair amino acids substitution matrix and its applications for protein structure prediction

Eran Eyal et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2007)

Article Biochemical Research Methods

Predicting residue contacts using pragmatic correlated mutations method: reducing the false positives

Petras J. Kundrotas et al.

BMC BIOINFORMATICS (2006)

Article Biochemistry & Molecular Biology

Correlated mutations: Advances and limitations. A study on fusion proteins and on the cohesin-dockerin families

Inbal Halperin et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2006)

Article Multidisciplinary Sciences

Physically realistic homology models built with ROSETTA can be more accurate than their templates

KMS Misura et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Article Biochemical Research Methods

Modular DAG-RNN Architectures for assembling coarse protein structures

Gianluca Pollastri et al.

JOURNAL OF COMPUTATIONAL BIOLOGY (2006)

Article Biochemical Research Methods

A two-stage approach for improved prediction of residue contact maps

Alessandro Vullo et al.

BMC BIOINFORMATICS (2006)

Article Biochemistry & Molecular Biology

CASP6 assessment of contact prediction

O Grana et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2005)

Review Biochemistry & Molecular Biology

Inter-residue interactions in protein folding and stability

MM Gromiha et al.

PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY (2004)

Article Biochemistry & Molecular Biology

Protein contact prediction using patterns of correlation

N Hamilton et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2004)

Article Biophysics

TOUCHSTONE II: A new approach to ab initio protein structure prediction

Y Zhang et al.

BIOPHYSICAL JOURNAL (2003)

Article Biochemistry & Molecular Biology

Predicting interresidue contacts using templates and pathways

Y Shao et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2003)

Article Biochemistry & Molecular Biology

Prediction of contact maps with neural networks and correlated mutations

P Fariselli et al.

PROTEIN ENGINEERING (2001)

Article Biochemistry & Molecular Biology

Exploring local and non-local interactions for protein stability by structural motif engineering

M Niggemann et al.

JOURNAL OF MOLECULAR BIOLOGY (2000)