Related references
Note: Only part of the references are listed.Pre-Columbian mycobacterial genomes reveal seals as a source of New World human tuberculosis
Kirsten I. Bos et al.
NATURE (2014)
Evolution and transmission of drug-resistant tuberculosis in a Russian population
Nicola Casali et al.
NATURE GENETICS (2014)
Diagnostic metagenomics: potential applications to bacterial, viral and parasitic infections
M. J. Pallen
PARASITOLOGY (2014)
Genotyping of ancient Mycobacterium tuberculosis strains reveals historic genetic diversity
Romy Mueller et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2014)
PolyTB: A genomic variation map for Mycobacterium tuberculosis
Francesc Coll et al.
TUBERCULOSIS (2014)
A robust SNP barcode for typing Mycobacterium tuberculosis complex strains
Francesc Coll et al.
NATURE COMMUNICATIONS (2014)
Within-Host Bacterial Diversity Hinders Accurate Reconstruction of Transmission Networks from Genomic Distance Data
Colin J. Worby et al.
PLOS COMPUTATIONAL BIOLOGY (2014)
Culture-independent detection and characterisation of Mycobacterium tuberculosis and M. africanum in sputum samples using shotgun metagenomics on a benchtop sequencer
Emma L. Doughty et al.
PEERJ (2014)
mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters
Hakon Jonsson et al.
BIOINFORMATICS (2013)
Make the most of your samples: Bayes factor estimators for high-dimensional models of sequence evolution
Guy Baele et al.
BMC BIOINFORMATICS (2013)
Inferring patient to patient transmission of Mycobacterium tuberculosis from whole genome sequencing data
Josephine M. Bryant et al.
BMC INFECTIOUS DISEASES (2013)
Whole-genome sequencing to delineate Mycobacterium tuberculosis outbreaks: a retrospective observational study
Timothy M. Walker et al.
LANCET INFECTIOUS DISEASES (2013)
Out-of-Africa migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans
Inaki Comas et al.
NATURE GENETICS (2013)
Metagenomic Analysis of Tuberculosis - Current Limitations
Suzanne M. Hingley-Wilson
NEW ENGLAND JOURNAL OF MEDICINE (2013)
Metagenomic Analysis of Tuberculosis in a Mummy
Jacqueline Z. -M. Chan et al.
NEW ENGLAND JOURNAL OF MEDICINE (2013)
Hidden Markov Models for Evolution and Comparative Genomics Analysis
Nadezda A. Bykova et al.
PLOS ONE (2013)
Population Structure of Mixed Mycobacterium tuberculosis Infection Is Strain Genotype and Culture Medium Dependent
Madeleine Hanekom et al.
PLOS ONE (2013)
Osteological and Biomolecular Evidence of a 7000-Year-Old Case of Hypertrophic Pulmonary Osteopathy Secondary to Tuberculosis from Neolithic Hungary
Muriel Masson et al.
PLOS ONE (2013)
Genome-Wide Comparison of Medieval and Modern Mycobacterium leprae
Verena J. Schuenemann et al.
SCIENCE (2013)
Insights into ancient leprosy and tuberculosis using metagenomics
Helen D. Donoghue
TRENDS IN MICROBIOLOGY (2013)
Rib lesions in skeletons from early neolithic sites in Central Germany: On the trail of tuberculosis at the onset of agriculture
Nicole Nicklisch et al.
AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY (2012)
SpolPred: rapid and accurate prediction of Mycobacterium tuberculosis spoligotypes from short genomic sequences
Francesc Coll et al.
BIOINFORMATICS (2012)
TB-Lineage: An online tool for classification and analysis of strains of Mycobacterium tuberculosis complex
Amina Shabbeer et al.
INFECTION GENETICS AND EVOLUTION (2012)
Bayesian Phylogenetics with BEAUti and the BEAST 1.7
Alexei J. Drummond et al.
MOLECULAR BIOLOGY AND EVOLUTION (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Detection and Molecular Characterization of 9000-Year-Old Mycobacterium tuberculosis from a Neolithic Settlement in the Eastern Mediterranean
Israel Hershkovitz et al.
PLOS ONE (2008)
Molecular clues of a microepidemy among homeless tuberculosis patients in Budapest due to a new and local Mycobacterium tuberculosis clade
Csaba Koedmoen et al.
INFECTION GENETICS AND EVOLUTION (2007)
Global phylogeography of Mycobacterium tuberculosis and implications for tuberculosis product development
Sebastien Gagneux et al.
LANCET INFECTIOUS DISEASES (2007)
RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
Alexandros Stamatakis
BIOINFORMATICS (2006)
Variable host-pathogen compatibility in Mycobacterium tuberculosis
S Gagneux et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Bayesian coalescent inference of past population dynamics from molecular sequences
AJ Drummond et al.
MOLECULAR BIOLOGY AND EVOLUTION (2005)
Patients with active tuberculosis often have different strains in the same sputum specimen
RM Warren et al.
AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE (2004)
Macro-array and bioinformatic analyses reveal mycobacterial 'core' genes, variation in the ESAT-6 gene family and new phylogenetic markers for the Mycobacterium tuberculosis complex
M Marmiesse et al.
MICROBIOLOGY-SGM (2004)
APE: Analyses of Phylogenetics and Evolution in R language
E Paradis et al.
BIOINFORMATICS (2004)
Genotypic and phenotypic heterogeneity among Mycobacterium tuberculosis isolates from pulmonary tuberculosis patients
IC Shamputa et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2004)
Widespread occurrence of Mycobacterium tuberculosis DNA from 18th-19th century Hungarians
HA Fletcher et al.
AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY (2003)
Molecular analysis of Mycobacterium tuberculosis DNA from a family of 18th century Hungarians
HA Fletcher et al.
MICROBIOLOGY-SGM (2003)
Mycobacterium tuberculosis complex DNA from an extinct bison dated 17,000 years before the present
BM Rothschild et al.
CLINICAL INFECTIOUS DISEASES (2001)