4.8 Article

Concentration- and chromosome-organization-dependent regulator unbinding from DNA for transcription regulation in living cells

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

Single-Molecule Dynamics of Enhanceosome Assembly in Embryonic Stem Cells

Jiji Chen et al.

Review Microbiology

Exploring bacterial cell biology with single-molecule tracking and super-resolution imaging

Andreas Gahlmann et al.

NATURE REVIEWS MICROBIOLOGY (2014)

Article Chemistry, Physical

Imaging and quantification of trans-membrane protein diffusion in living bacteria

Felix Oswald et al.

PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2014)

Article Biochemistry & Molecular Biology

Multiple-binding-site mechanism explains concentration-dependent unbinding rates of DNA-binding proteins

Charles E. Sing et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Physics, Multidisciplinary

Stochastic Ratchet Mechanisms for Replacement of Proteins Bound to DNA

S. Cocco et al.

PHYSICAL REVIEW LETTERS (2014)

Article Biochemical Research Methods

Regulation of the Nucleosome Repeat Length In Vivo by the DNA Sequence, Protein Concentrations and Long-Range Interactions

Daria A. Beshnova et al.

PLOS COMPUTATIONAL BIOLOGY (2014)

Article Biochemistry & Molecular Biology

Single-Molecule Dynamics and Mechanisms of Metalloregulators and Metallochaperones

Peng Chen et al.

BIOCHEMISTRY (2013)

Review Biochemistry & Molecular Biology

Single-Molecule Approaches Embrace Molecular Cohorts

Taekjip Ha

Review Biochemistry & Molecular Biology

Quantifying transcription factor kinetics: At work or at play?

Florian Mueller et al.

CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY (2013)

Article Biochemical Research Methods

Extracting intracellular diffusive states and transition rates from single-molecule tracking data

Fredrik Persson et al.

NATURE METHODS (2013)

Article Biochemical Research Methods

Single-molecule imaging of transcription factor binding to DNA in live mammalian cells

J. Christof M. Gebhardt et al.

NATURE METHODS (2013)

Article Multidisciplinary Sciences

Single-molecule DNA repair in live bacteria

Stephan Uphoff et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Article Multidisciplinary Sciences

Short-time movement of E. coli chromosomal loci depends on coordinate and subcellular localization

Avelino Javer et al.

NATURE COMMUNICATIONS (2013)

Article Multidisciplinary Sciences

Dynamics and stoichiometry of a regulated enhancer-binding protein in live Escherichia coli cells

Parul Mehta et al.

NATURE COMMUNICATIONS (2013)

Article Biochemistry & Molecular Biology

Gene location and DNA density determine transcription factor distributions in Escherichia coli

Thomas E. Kuhlman et al.

MOLECULAR SYSTEMS BIOLOGY (2012)

Article Biochemical Research Methods

Rational design of true monomeric and bright photoactivatable fluorescent proteins

Mingshu Zhang et al.

NATURE METHODS (2012)

Article Biochemistry & Molecular Biology

A benchmark for chromatin binding measurements in live cells

Davide Mazza et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Physics, Multidisciplinary

Impact of DNA Twist Accumulation on Progressive Helical Wrapping of Torsionally Constrained DNA

Wei Li et al.

PHYSICAL REVIEW LETTERS (2012)

Article Multidisciplinary Sciences

Direct substitution and assisted dissociation pathways for turning off transcription by a MerR-family metalloregulator

Chandra P. Joshi et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Review Physics, Multidisciplinary

Physical descriptions of the bacterial nucleoid at large scales, and their biological implications

Vincenzo G. Benza et al.

REPORTS ON PROGRESS IN PHYSICS (2012)

Article Biochemistry & Molecular Biology

Concentration-dependent exchange accelerates turnover of proteins bound to double-stranded DNA

John S. Graham et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Multidisciplinary Sciences

Single-molecule investigations of the stringent response machinery in living bacterial cells

Brian P. English et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Multidisciplinary Sciences

Simultaneous single-molecule measurements of phage T7 replisome composition and function reveal the mechanism of polymerase exchange

Joseph J. Loparo et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Biochemistry & Molecular Biology

Condensed DNA: Condensing the concepts

Vladimir B. Teif et al.

PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY (2011)

Article Multidisciplinary Sciences

Chromosome Organization by a Nucleoid-Associated Protein in Live Bacteria

Wenqin Wang et al.

SCIENCE (2011)

Article Biochemistry & Molecular Biology

Modulation of HU-DNA interactions by salt concentration and applied force

Botao Xiao et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Multidisciplinary Sciences

Nucleosome-mediated cooperativity between transcription factors

Leonid A. Mirny

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Multidisciplinary Sciences

Counting RAD51 proteins disassembling from nucleoprotein filaments under tension

Joost van Mameren et al.

NATURE (2009)

Review Multidisciplinary Sciences

Metalloproteins and metal sensing

Kevin J. Waldron et al.

NATURE (2009)

Article Biochemical Research Methods

A bright and photostable photoconvertible fluorescent protein

Sean A. McKinney et al.

NATURE METHODS (2009)

Article Multidisciplinary Sciences

Facilitated diffusion with DNA coiling

Michael A. Lomholt et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Physics, Fluids & Plasmas

Shape of nonseptated Escherichia coli is asymmetric

E. Itan et al.

PHYSICAL REVIEW E (2008)

Article Multidisciplinary Sciences

How DNA coiling enhances target localization by proteins

B. van den Broek et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Multidisciplinary Sciences

Probing transcription factor dynamics at the single-molecule level in a living cell

Johan Elf et al.

SCIENCE (2007)

Article Microbiology

Ligand-controlled proteolysis of the Escherichia coli transcriptional regulator ZntR

Mihaela Pruteanu et al.

JOURNAL OF BACTERIOLOGY (2007)

Article Physics, Multidisciplinary

Role of tension and twist in single-molecule DNA condensation

K. Besteman et al.

PHYSICAL REVIEW LETTERS (2007)

Review Chemistry, Inorganic & Nuclear

Metal sensor proteins: nature's metalloregulated allosteric switches

David P. Giedroc et al.

DALTON TRANSACTIONS (2007)

Review Biochemistry & Molecular Biology

Shape and compaction of Escherichia coli nucleoids

Steven B. Zimmerman

JOURNAL OF STRUCTURAL BIOLOGY (2006)

Article Multidisciplinary Sciences

Molecular basis of metal-ion selectivity and zeptomolar sensitivity by CueR

A Changela et al.

SCIENCE (2003)

Review Microbiology

The MerR family of transcriptional regulators

NL Brown et al.

FEMS MICROBIOLOGY REVIEWS (2003)

Article Biochemistry & Molecular Biology

The functional analysis of directed amino-acid alterations in ZntR from Escherichia coli

S Khan et al.

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2002)

Article Biochemistry & Molecular Biology

The independent cue and cus systems confer copper tolerance during aerobic and anaerobic growth in Escherichia coli

FW Outten et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2001)

Article Multidisciplinary Sciences

Femtomolar sensitivity of metalloregulatory proteins controlling zinc homeostasis

CE Outten et al.

SCIENCE (2001)

Article Multidisciplinary Sciences

Crystal structure of the transcription activator BmrR bound to DNA and a drug

EEZ Heldwein et al.

NATURE (2001)

Article Biochemistry & Molecular Biology

CueR (YbbI) of Escherichia coli is a MerR family regulator controlling expression of the copper exporter CopA

JV Stoyanov et al.

MOLECULAR MICROBIOLOGY (2001)

Article Biochemistry & Molecular Biology

Transcriptional activation of an Escherichia coli copper efflux regulon by the chromosomal MerR homologue, CueR

FW Outten et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2000)

Article Multidisciplinary Sciences

One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products

KA Datsenko et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)