4.8 Article

Transfer RNA genes experience exceptionally elevated mutation rates

Related references

Note: Only part of the references are listed.
Review Cell Biology

The emerging complexity of the tRNA world: mammalian tRNAs beyond protein synthesis

Paul Schimmel

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2018)

Review Oncology

Roles of tRNA-derived fragments in human cancers

Chunxiao Sun et al.

CANCER LETTERS (2018)

Article Multidisciplinary Sciences

A subcellular map of the human proteome

Peter J. Thul et al.

SCIENCE (2017)

Article Multidisciplinary Sciences

Estimating the human mutation rate from autozygous segments reveals population differences in human mutational processes

Vagheesh M. Narasimhan et al.

NATURE COMMUNICATIONS (2017)

Article Biochemistry & Molecular Biology

Chromatin and RNA Maps Reveal Regulatory Long Noncoding RNAs in Mouse

Gireesh K. Bogu et al.

MOLECULAR AND CELLULAR BIOLOGY (2016)

Article Biochemistry & Molecular Biology

GtRNAdb 2.0: an expanded database of transfer RNA genes identified in complete and draft genomes

Patricia P. Chan et al.

NUCLEIC ACIDS RESEARCH (2016)

Review Biochemistry & Molecular Biology

Transcription as a Threat to Genome Integrity

Helene Gaillard et al.

ANNUAL REVIEW OF BIOCHEMISTRY, VOL 85 (2016)

Article Biochemistry & Molecular Biology

A Thousand Fly Genomes: An Expanded Drosophila Genome Nexus

Justin B. Lack et al.

MOLECULAR BIOLOGY AND EVOLUTION (2016)

Article Biochemistry & Molecular Biology

The Lupus Autoantigen La Prevents Mis-channeling of tRNA Fragments into the Human MicroRNA Pathway

Daniele Hasler et al.

MOLECULAR CELL (2016)

Article Biochemistry & Molecular Biology

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update

Enis Afgan et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Biochemistry & Molecular Biology

tRNAscan-SE On-line: integrating search and context for analysis of transfer RNA genes

Todd M. Lowe et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Biochemistry & Molecular Biology

tRNA processing defects induce replication stress and Chk2-dependent disruption of piRNA transcription

Anahi Molla-Herman et al.

EMBO JOURNAL (2015)

Article Multidisciplinary Sciences

Integrative analysis of 111 reference human epigenomes

Anshul Kundaje et al.

NATURE (2015)

Article Multidisciplinary Sciences

A global reference for human genetic variation

David M. Altshuler et al.

NATURE (2015)

Article Biochemical Research Methods

Efficient and quantitative high-throughput tRNA sequencing

Guanqun Zheng et al.

NATURE METHODS (2015)

Article Biochemistry & Molecular Biology

Natural Selection Constrains Neutral Diversity across A Wide Range of Species

Russell B. Corbett-Detig et al.

PLOS BIOLOGY (2015)

Review Genetics & Heredity

Emerging roles of tRNA in adaptive translation, signalling dynamics and disease

Sebastian Kirchner et al.

NATURE REVIEWS GENETICS (2015)

Review Genetics & Heredity

Transcription-Associated Mutagenesis

Sue Jinks-Robertson et al.

ANNUAL REVIEW OF GENETICS, VOL 48 (2014)

Article Multidisciplinary Sciences

Ribosome stalling induced by mutation of a CNS-specific tRNA causes neurodegeneration

Ryuta Ishimura et al.

SCIENCE (2014)

Article Genetics & Heredity

A Comprehensive tRNA Deletion Library Unravels the Genetic Architecture of the tRNA Pool

Zohar Bloom-Ackermann et al.

PLOS GENETICS (2014)

Review Genetics & Heredity

Causes of Genome Instability

Andres Aguilera et al.

ANNUAL REVIEW OF GENETICS, VOL 47 (2013)

Review Ecology

Mutation Load: The Fitness of Individuals in Populations Where Deleterious Alleles Are Abundant

Aneil F. Agrawal et al.

ANNUAL REVIEW OF ECOLOGY, EVOLUTION, AND SYSTEMATICS, VOL 43 (2012)

Article Biochemistry & Molecular Biology

Adaptive Evolution and Effective Population Size in Wild House Mice

Megan Phifer-Rixey et al.

MOLECULAR BIOLOGY AND EVOLUTION (2012)

Article Multidisciplinary Sciences

An integrated encyclopedia of DNA elements in the human genome

Ian Dunham et al.

NATURE (2012)

Review Genetics & Heredity

Transcription as a source of genome instability

Nayun Kim et al.

NATURE REVIEWS GENETICS (2012)

Review Genetics & Heredity

Human Mitochondrial tRNAs: Biogenesis, Function, Structural Aspects, and Diseases

Tsutomu Suzuki et al.

ANNUAL REVIEW OF GENETICS, VOL 45 (2011)

Article Genetics & Heredity

Whole-genome sequencing of multiple Arabidopsis thaliana populations

Jun Cao et al.

NATURE GENETICS (2011)

Review Genetics & Heredity

Transcription by RNA polymerase III: more complex than we thought

Robert J. White

NATURE REVIEWS GENETICS (2011)

Article Biochemistry & Molecular Biology

Widespread occurrence of non-canonical transcription termination by human RNA polymerase III

Andrea Orioli et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Biochemistry & Molecular Biology

A User's Guide to the Encyclopedia of DNA Elements (ENCODE)

Richard M. Myers et al.

PLOS BIOLOGY (2011)

Review Cell Biology

3′ processing of eukaryotic precursor tRNAs

Richard J. Maraia et al.

WILEY INTERDISCIPLINARY REVIEWS-RNA (2011)

Article Biochemistry & Molecular Biology

Detection of nonneutral substitution rates on mammalian phylogenies

Katherine S. Pollard et al.

GENOME RESEARCH (2010)

Article Biotechnology & Applied Microbiology

Analysis of the complement and molecular evolution of tRNA genes in cow

Dave T. P. Tang et al.

BMC GENOMICS (2009)

Article Cell Biology

A novel class of small RNAs: tRNA-derived RNA fragments (tRFs)

Yong Sun Lee et al.

GENES & DEVELOPMENT (2009)

Article Biotechnology & Applied Microbiology

Design and analysis of ChIP-seq experiments for DNA-binding proteins

Peter V. Kharchenko et al.

NATURE BIOTECHNOLOGY (2008)

Article Genetics & Heredity

Hypermutable Non-Synonymous Sites Are under Stronger Negative Selection

Steffen Schmidt et al.

PLOS GENETICS (2008)

Article Multidisciplinary Sciences

Activation-induced cytidine deaminase action is strongly stimulated by mutations of the THO complex

Belen Gomez-Gonzalez et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Biochemistry & Molecular Biology

Recent human effective population size estimated from linkage disequilibrium

Albert Tenesa et al.

GENOME RESEARCH (2007)

Article Multidisciplinary Sciences

Adaptive genic evolution in the Drosophila genomes

Joshua A. Shapiro et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Biochemistry & Molecular Biology

Aligning multiple genomic sequences with the threaded blockset aligner

M Blanchette et al.

GENOME RESEARCH (2004)

Article Multidisciplinary Sciences

Changes in genomewide occupancy of core transcriptional regulators during heat stress

SJ Zanton et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Article Biochemistry & Molecular Biology

The UCSC Table Browser data retrieval tool

D Karolchik et al.

NUCLEIC ACIDS RESEARCH (2004)

Article Multidisciplinary Sciences

The RNA polymerase III transcriptome revealed by genome-wide localization and activity-occupancy relationships

DN Roberts et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)

Article Genetics & Heredity

Transcription-associated mutational asymmetry in mammalian evolution

P Green et al.

NATURE GENETICS (2003)

Review Multidisciplinary Sciences

Initial sequencing and comparative analysis of the mouse genome

RH Waterston et al.

NATURE (2002)

Review Multidisciplinary Sciences

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

S Kaul et al.

NATURE (2000)

Article Biochemistry & Molecular Biology

Effects of 5′ leader and 3′ trailer structures on pre-tRNA processing by nuclear RNase P

WA Ziehler et al.

BIOCHEMISTRY (2000)

Article Multidisciplinary Sciences

TAF-containing and TAF-independent forms of transcriptionally active TBP in vivo

L Kuras et al.

SCIENCE (2000)