4.8 Article

Self-replicating colloidal clusters

Publisher

NATL ACAD SCIENCES
DOI: 10.1073/pnas.1313601111

Keywords

self-assembly; catalytic cycle

Funding

  1. George F. Carrier Fellowship
  2. National Science Foundation through the Harvard Materials Research Science and Engineering Center [DMR-0820484]
  3. Division of Mathematical Sciences [DMS-0907985]
  4. Foundational Questions in Evolutionary Biology Fund [RFP-12-04]
  5. Division Of Mathematical Sciences
  6. Direct For Mathematical & Physical Scien [1411694] Funding Source: National Science Foundation

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We construct schemes for self-replicating clusters of spherical particles, validated with computer simulations in a finite-temperature heat bath. Each particle has stickers uniformly distributed over its surface, and the rules for self-replication are encoded into the specificity and strength of interactions. Geometrical constraints imply that a compact cluster can copy itself only with help of a catalyst, a smaller cluster that increases the surface area to form a template. Replication efficiency requires optimizing interaction energies to destabilize all kinetic traps along the reaction pathway, as well as initiating a trigger event that specifies when the new cluster disassociates from its parent. Although there is a reasonably wide parameter range for self-replication, there is a subtle balance between the speed of the reaction, and the error rate. As a proof of principle, we construct interactions that self-replicate an octahedron, requiring a two-particle dimer for a catalyst. The resulting self-replication scheme is a hypercycle, and computer simulations confirm the exponential growth of both octahedron and catalyst replicas.

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