4.8 Article

Chromatin landscape and circadian dynamics: Spatial and temporal organization of clock transcription

Related references

Note: Only part of the references are listed.
Article Cell Biology

Circadian clock: linking epigenetics to aging

Ricardo Orozco-Solis et al.

CURRENT OPINION IN GENETICS & DEVELOPMENT (2014)

Article Cell Biology

Transcription in the context of the 3D nucleus

Kerstin S. Wendt et al.

CURRENT OPINION IN GENETICS & DEVELOPMENT (2014)

Article Cell Biology

CLOCK: BMAL1 is a pioneer-like transcription factor

Jerome S. Menet et al.

GENES & DEVELOPMENT (2014)

Article Biochemistry & Molecular Biology

Circadian Control of Fatty Acid Elongation by SIRT1 Protein-mediated Deacetylation of Acetyl-coenzyme A Synthetase 1

Saurabh Sahar et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2014)

Article Biochemistry & Molecular Biology

Phosphorylation of LSD1 by PKCα Is Crucial for Circadian Rhythmicity and Phase Resetting

Hye Jin Nam et al.

MOLECULAR CELL (2014)

Article Biochemistry & Molecular Biology

Rhythmic U2af26 Alternative Splicing Controls PERIOD1 Stability and the Circadian Clock in Mice

Marco Preussner et al.

MOLECULAR CELL (2014)

Review Endocrinology & Metabolism

Circadian clock control of endocrine factors

Karen L. Gamble et al.

NATURE REVIEWS ENDOCRINOLOGY (2014)

Article Multidisciplinary Sciences

Circadian clock-dependent and -independent rhythmic proteomes implement distinct diurnal functions in mouse liver

Daniel Mauvoisin et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Article Multidisciplinary Sciences

Circadian rhythm of hyperoxidized peroxiredoxin II is determined by hemoglobin autoxidation and the 20S proteasome in red blood cells

Chun-Seok Cho et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Review Biochemistry & Molecular Biology

Sirtuins and the circadian clock: Bridging chromatin and metabolism

Selma Masri et al.

SCIENCE SIGNALING (2014)

Review Biochemistry & Molecular Biology

Chromatin and beyond: the multitasking roles for SIRT6

Site Kugel et al.

TRENDS IN BIOCHEMICAL SCIENCES (2014)

Editorial Material Cell Biology

How pervasive are circadian oscillations?

V. R. Patel et al.

TRENDS IN CELL BIOLOGY (2014)

Article Biochemistry & Molecular Biology

Reprogramming of the Circadian Clock by Nutritional Challenge

Kristin L. Eckel-Mahan et al.

Article Biochemistry & Molecular Biology

RNA-Methylation-Dependent RNA Processing Controls the Speed of the Circadian Clock

Jean-Michel Fustin et al.

Article Biochemistry & Molecular Biology

miRNAs Are Required for Generating a Time Delay Critical for the Circadian Oscillator

Rongmin Chen et al.

CURRENT BIOLOGY (2013)

Article Cell Biology

The circadian epigenome: how metabolism talks to chromatin remodeling

Lorena Aguilar-Arnal et al.

CURRENT OPINION IN CELL BIOLOGY (2013)

Article Biochemistry & Molecular Biology

Activation of the Protein Deacetylase SIRT6 by Long-chain Fatty Acids and Widespread Deacylation by Mammalian Sirtuins

Jessica L. Feldman et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2013)

Review Cell Biology

AMPK at the crossroads of circadian clocks and metabolism

Sabine D. Jordan et al.

MOLECULAR AND CELLULAR ENDOCRINOLOGY (2013)

Article Biochemistry & Molecular Biology

Calorie Restriction and SIRT3 Trigger Global Reprogramming of the Mitochondrial Protein Acetylome

Alexander S. Hebert et al.

MOLECULAR CELL (2013)

Article Multidisciplinary Sciences

SCFFBXL3 ubiquitin ligase targets cryptochromes at their cofactor pocket

Weiman Xing et al.

NATURE (2013)

Article Multidisciplinary Sciences

SIRT6 regulates TNF-α secretion through hydrolysis of long-chain fatty acyl lysine

Hong Jiang et al.

NATURE (2013)

Review Neurosciences

Emerging roles for post-transcriptional regulation in circadian clocks

Chunghun Lim et al.

NATURE NEUROSCIENCE (2013)

Article Biochemistry & Molecular Biology

Cycles in spatial and temporal chromosomal organization driven by the circadian clock

Lorena Aguilar-Arnal et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2013)

Review Physiology

METABOLISM AND THE CIRCADIAN CLOCK CONVERGE

Kristin Eckel-Mahan et al.

PHYSIOLOGICAL REVIEWS (2013)

Article Multidisciplinary Sciences

Histone methyltransferase MLL3 contributes to genome-scale circadian transcription

Utham K. Valekunja et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Article Multidisciplinary Sciences

Pharmacological modulation of circadian rhythms by synthetic activators of the deacetylase SIRT1

Marina M. Bellet et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Article Multidisciplinary Sciences

Circadian acetylome reveals regulation of mitochondrial metabolic pathways

Selma Masri et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Article Multidisciplinary Sciences

Influence of Threonine Metabolism on S-Adenosylmethionine and Histone Methylation

Ng Shyh-Chang et al.

SCIENCE (2013)

Article Multidisciplinary Sciences

Circadian Clock NAD+ Cycle Drives Mitochondrial Oxidative Metabolism in Mice

Clara Bien Peek et al.

SCIENCE (2013)

Article Biochemistry & Molecular Biology

Regulation of Circadian Behavioral Output via a MicroRNA-JAK/STAT Circuit

Wenyu Luo et al.

Article Biochemistry & Molecular Biology

Three-Dimensional Folding and Functional Organization Principles of the Drosophila Genome

Tom Sexton et al.

Article Biochemistry & Molecular Biology

Connecting Threads: Epigenetics and Metabolism

Sayako Katada et al.

Review Cell Biology

Metabolic Regulation of Epigenetics

Chao Lu et al.

CELL METABOLISM (2012)

Review Biochemistry & Molecular Biology

Protein and nucleic acid methylating enzymes: mechanisms and regulation

Daniel D. Le et al.

CURRENT OPINION IN CHEMICAL BIOLOGY (2012)

Review Cell Biology

A decade of 3C technologies: insights into nuclear organization

Elzo de Wit et al.

GENES & DEVELOPMENT (2012)

Review Biochemistry & Molecular Biology

Clocks, Metabolism, and the Epigenome

Dan Feng et al.

MOLECULAR CELL (2012)

Article Multidisciplinary Sciences

Topological domains in mammalian genomes identified by analysis of chromatin interactions

Jesse R. Dixon et al.

NATURE (2012)

Article Multidisciplinary Sciences

Spatial partitioning of the regulatory landscape of the X-inactivation centre

Elphege P. Nora et al.

NATURE (2012)

Article Biochemical Research Methods

Hi-C: A comprehensive technique to capture the conformation of genomes

Jon-Matthew Belton et al.

METHODS (2012)

Article Multidisciplinary Sciences

Coordination of the transcriptome and metabolome by the circadian clock

Kristin L. Eckel-Mahan et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Multidisciplinary Sciences

Human blood metabolite timetable indicates internal body time

Takeya Kasukawa et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Multidisciplinary Sciences

The human circadian metabolome

Robert Dallmann et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Multidisciplinary Sciences

Identification of Small Molecule Activators of Cryptochrome

Tsuyoshi Hirota et al.

SCIENCE (2012)

Article Biotechnology & Applied Microbiology

Regulation of alternative splicing by the circadian clock and food related cues

Nicholas J. McGlincy et al.

GENOME BIOLOGY (2012)

Article Biochemistry & Molecular Biology

Diverse gene reprogramming events occur in the same spatial clusters of distal regulatory elements

Ofir Hakim et al.

GENOME RESEARCH (2011)

Article Multidisciplinary Sciences

Circadian rhythms persist without transcription in a eukaryote

John S. O'Neill et al.

NATURE (2011)

Article Multidisciplinary Sciences

Circadian clocks in human red blood cells

John S. O'Neill et al.

NATURE (2011)

Article Multidisciplinary Sciences

Histone Lysine Demethylase JARID1a Activates CLOCK-BMAL1 and Influences the Circadian Clock

Luciano DiTacchio et al.

SCIENCE (2011)

Article Multidisciplinary Sciences

A Molecular Mechanism for Circadian Clock Negative Feedback

Hao A. Duong et al.

SCIENCE (2011)

Review Physiology

Suprachiasmatic Nucleus: Cell Autonomy and Network Properties

David K. Welsh et al.

ANNUAL REVIEW OF PHYSIOLOGY (2010)

Article Biochemistry & Molecular Biology

Genome-Wide Profiling of the Core Clock Protein BMAL1 Targets Reveals a Strict Relationship with Metabolism

Fumiyuki Hatanaka et al.

MOLECULAR AND CELLULAR BIOLOGY (2010)

Review Cell Biology

Clocks not winding down: unravelling circadian networks

Eric E. Zhang et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2010)

Article Biochemistry & Molecular Biology

The histone methyltransferase MLL1 permits the oscillation of circadian gene expression

Sayako Katada et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2010)

Review Multidisciplinary Sciences

Circadian Integration of Metabolism and Energetics

Joseph Bass et al.

SCIENCE (2010)

Article Cell Biology

Integration of microRNA miR-122 in hepatic circadian gene expression

David Gatfield et al.

GENES & DEVELOPMENT (2009)

Article Multidisciplinary Sciences

Essential roles of CKIδ and CKIε in the mammalian circadian clock

Hyeongmin Lee et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Multidisciplinary Sciences

Oscillations in supercoiling drive circadian gene expression in cyanobacteria

Vikram Vijayan et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Multidisciplinary Sciences

Circadian Control of the NAD+ Salvage Pathway by CLOCK-SIRT1

Yasukazu Nakahata et al.

SCIENCE (2009)

Article Multidisciplinary Sciences

AMPK Regulates the Circadian Clock by Cryptochrome Phosphorylation and Degradation

Katja A. Lamia et al.

SCIENCE (2009)

Article Multidisciplinary Sciences

Circadian Clock Feedback Cycle Through NAMPT-Mediated NAD(+) Biosynthesis

Kathryn Moynihan Ramsey et al.

SCIENCE (2009)

Article Multidisciplinary Sciences

Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome

Erez Lieberman-Aiden et al.

SCIENCE (2009)

Article Multidisciplinary Sciences

ATP-Citrate Lyase Links Cellular Metabolism to Histone Acetylation

Kathryn E. Wellen et al.

SCIENCE (2009)

Article Biochemistry & Molecular Biology

SIRT1 regulates circadian clock gene expression through PER2 deacetylation

Gad Asher et al.

Article Multidisciplinary Sciences

CLOCK-mediated acetylation of BMAL1 controls circadian function

Jun Hirayama et al.

NATURE (2007)

Article Multidisciplinary Sciences

Circadian rhythms of superhelical status of DNA in cyanobacteria

Mark A. Woelfle et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Neurosciences

microRNA modulation of circadian-clock period and entrainment

Hai-Ying M. Cheng et al.

NEURON (2007)

Review Genetics & Heredity

Dynamic genome architecture in the nuclear space:: regulation of gene expression in three dimensions

Christian Lanctot et al.

NATURE REVIEWS GENETICS (2007)

Article Biochemistry & Molecular Biology

The polycomb group protein EZH2 is required for mammalian circadian clock function

Jean-Pierre Etchegaray et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2006)

Article Biochemistry & Molecular Biology

Circadian regulator CLOCK is a histone acetyltransferase

Masao Doi et al.

Article Biochemistry & Molecular Biology

Histone acetyltransferase-dependent chromatin remodeling and the vascular clock

AM Curtis et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2004)

Article Biochemistry & Molecular Biology

Circadian and light-induced transcription of clock gene Per1 depends on histone acetylation and deacetylation

Y Naruse et al.

MOLECULAR AND CELLULAR BIOLOGY (2004)

Article Genetics & Heredity

Active genes dynamically colocalize to shared sites of ongoing transcription

CS Osborne et al.

NATURE GENETICS (2004)

Article Multidisciplinary Sciences

Rhythmic histone acetylation underlies transcription in the mammalian circadian clock

JP Etchegaray et al.

NATURE (2003)

Article Biochemistry & Molecular Biology

Coordinated transcription of key pathways in the mouse by the circadian clock

S Panda et al.

Article Multidisciplinary Sciences

Extensive and divergent circadian gene expression in liver and heart

KF Storch et al.

NATURE (2002)

Article Multidisciplinary Sciences

Regulation of clock and NPAS2 DNA binding by the redox state of NAD cofactors

J Rutter et al.

SCIENCE (2001)

Article Neurosciences

Light induces chromatin modification in cells of the mammalian circadian clock

C Crosio et al.

NATURE NEUROSCIENCE (2000)