4.8 Article

Multiplatform single-sample estimates of transcriptional activation

Related references

Note: Only part of the references are listed.
Article Biochemical Research Methods

SIBER: systematic identification of bimodally expressed genes using RNAseq data

Pan Tong et al.

BIOINFORMATICS (2013)

Article Mathematical & Computational Biology

Removing technical variability in RNA-seq data using conditional quantile normalization

Kasper D. Hansen et al.

BIOSTATISTICS (2012)

Article Biotechnology & Applied Microbiology

A single-sample microarray normalization method to facilitate personalized-medicine workflows

Stephen R. Piccolo et al.

GENOMICS (2012)

Article Biochemistry & Molecular Biology

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

Davis J. McCarthy et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Biochemistry & Molecular Biology

RNA sequencing reveals two major classes of gene expression levels in metazoan cells

Daniel Hebenstreit et al.

MOLECULAR SYSTEMS BIOLOGY (2011)

Review Medicine, General & Internal

GENOMIC MEDICINE Genomics and the Continuum of Cancer Care

Ultan McDermott et al.

NEW ENGLAND JOURNAL OF MEDICINE (2011)

Article Biochemistry & Molecular Biology

The Gene Expression Barcode: leveraging public data repositories to begin cataloging the human and murine transcriptomes

Matthew N. McCall et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Biochemical Research Methods

The GNUMAP algorithm: unbiased probabilistic mapping of oligonucleotides from next-generation sequencing

Nathan L. Clement et al.

BIOINFORMATICS (2010)

Article Biochemical Research Methods

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

Mark D. Robinson et al.

BIOINFORMATICS (2010)

Article Mathematical & Computational Biology

Frozen robust multiarray analysis (fRMA)

Matthew N. McCall et al.

BIOSTATISTICS (2010)

Review Genetics & Heredity

Tackling the widespread and critical impact of batch effects in high-throughput data

Jeffrey T. Leek et al.

NATURE REVIEWS GENETICS (2010)

Article Biotechnology & Applied Microbiology

Differential expression analysis for sequence count data

Simon Anders et al.

GENOME BIOLOGY (2010)

Article Biochemical Research Methods

TopHat: discovering splice junctions with RNA-Seq

Cole Trapnell et al.

BIOINFORMATICS (2009)

Article Biochemical Research Methods

The Sequence Alignment/Map format and SAMtools

Heng Li et al.

BIOINFORMATICS (2009)

Article Biochemical Research Methods

Fast and accurate short read alignment with Burrows-Wheeler transform

Heng Li et al.

BIOINFORMATICS (2009)

Article Biochemical Research Methods

A Quick Guide for Developing Effective Bioinformatics Programming Skills

Joel T. Dudley et al.

PLOS COMPUTATIONAL BIOLOGY (2009)

Review Clinical Neurology

Molecular predictors in glioblastoma - Toward personalized therapy

Howard Colman et al.

ARCHIVES OF NEUROLOGY (2008)

Article Biochemistry & Molecular Biology

RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays

John C. Marioni et al.

GENOME RESEARCH (2008)

Article Multidisciplinary Sciences

Alternative isoform regulation in human tissue transcriptomes

Eric T. Wang et al.

NATURE (2008)

Article Biochemical Research Methods

Mapping and quantifying mammalian transcriptomes by RNA-Seq

Ali Mortazavi et al.

NATURE METHODS (2008)

Article Biochemical Research Methods

A gene expression bar code for microarray data

Michael J. Zilliox et al.

NATURE METHODS (2007)

Article Biotechnology & Applied Microbiology

Model-based analysis of two-color arrays (MA2C)

Jun S. Song et al.

GENOME BIOLOGY (2007)

Article Biotechnology & Applied Microbiology

Exon arrays provide accurate assessments of gene expression

Karen Kapur et al.

GENOME BIOLOGY (2007)

Article Multidisciplinary Sciences

Model-based analysis of tiling-arrays for ChIP-chip

W. Evan Johnson et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Article Biochemistry & Molecular Biology

Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data

MH Dai et al.

NUCLEIC ACIDS RESEARCH (2005)

Article Biochemical Research Methods

affy -: analysis of Affymetrix GeneChip data at the probe level

L Gautier et al.

BIOINFORMATICS (2004)

Article Medicine, General & Internal

A multigene assay to predict recurrence of tamoxifen-treated, node-negative breast cancer

S Paik et al.

NEW ENGLAND JOURNAL OF MEDICINE (2004)

Article Multidisciplinary Sciences

Gene expression profiling predicts clinical outcome of breast cancer

LJ van't Veer et al.

NATURE (2002)

Article Statistics & Probability

A statistical framework for expression-based molecular classification in cancer

G Parmigiani et al.

JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY (2002)