Related references
Note: Only part of the references are listed.Positional correlation analysis improves reconstruction of full-length transcripts and alternative isoforms from noisy array signals or short reads
Shuji Kawaguchi et al.
BIOINFORMATICS (2012)
An integrated encyclopedia of DNA elements in the human genome
Ian Dunham et al.
NATURE (2012)
Small Open Reading Frames: Current Prediction Techniques and Future Prospect
Haoyu Cheng et al.
CURRENT PROTEIN & PEPTIDE SCIENCE (2011)
Discovery and annotation of small proteins using genomics, proteomics, and computational approaches
Xiaohan Yang et al.
GENOME RESEARCH (2011)
Lowly Expressed Genes in Arabidopsis thaliana Bear the Signature of Possible Pseudogenization by Promoter Degradation
Liang Yang et al.
MOLECULAR BIOLOGY AND EVOLUTION (2011)
RiceFOX: A Database of Arabidopsis Mutant Lines Overexpressing Rice Full-Length cDNA that Contains a Wide Range of Trait Information to Facilitate Analysis of Gene Function
Tetsuya Sakurai et al.
PLANT AND CELL PHYSIOLOGY (2011)
ARTADE2DB: Improved Statistical Inferences for Arabidopsis Gene Functions and Structure Predictions by Dynamic Structure-Based Dynamic Expression (DSDE) Analyses
Kei Iida et al.
PLANT AND CELL PHYSIOLOGY (2011)
sORF finder: a program package to identify small open reading frames with high coding potential
Kousuke Hanada et al.
BIOINFORMATICS (2010)
Genome-wide mapping of alternative splicing in Arabidopsis thaliana
Sergei A. Filichkin et al.
GENOME RESEARCH (2010)
Stomagen positively regulates stomatal density in Arabidopsis
Shigeo S. Sugano et al.
NATURE (2010)
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
Cole Trapnell et al.
NATURE BIOTECHNOLOGY (2010)
Small Peptides Switch the Transcriptional Activity of Shavenbaby During Drosophila Embryogenesis
T. Kondo et al.
SCIENCE (2010)
Plant Peptides Govern Terminal Differentiation of Bacteria in Symbiosis
Willem Van de Velde et al.
SCIENCE (2010)
Secreted Peptide Signals Required for Maintenance of Root Stem Cell Niche in Arabidopsis
Yo Matsuzaki et al.
SCIENCE (2010)
Most Dark Matter'' Transcripts Are Associated With Known Genes
Harm van Bakel et al.
PLOS BIOLOGY (2010)
Defensin-like polypeptide LUREs are pollen tube attractants secreted from synergid cells
Satohiro Okuda et al.
NATURE (2009)
Epidermal Cell Density is Autoregulated via a Secretory Peptide, EPIDERMAL PATTERNING FACTOR 2 in Arabidopsis Leaves
Kenta Hara et al.
PLANT AND CELL PHYSIOLOGY (2009)
Evolutionary and Expression Signatures of Pseudogenes in Arabidopsis and Rice
Cheng Zou et al.
PLANT PHYSIOLOGY (2009)
Silencing a candidate nematode effector gene corresponding to the tomato resistance gene Mi-1 leads to acquisition of virulence
Cynthia A. Gleason et al.
MOLECULAR PLANT-MICROBE INTERACTIONS (2008)
Mapping and quantifying mammalian transcriptomes by RNA-Seq
Ali Mortazavi et al.
NATURE METHODS (2008)
Identification of a biologically active, small, secreted peptide in Arabidopsis by in silico gene screening, followed by LC-MS-based structure analysis
Kentaro Ohyama et al.
PLANT JOURNAL (2008)
Discovery and revision of Arabidopsis genes by proteogenomics
Natalie E. Castellana et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
The CLE family of plant polypeptide signaling molecules
J. H. Jun et al.
CELLULAR AND MOLECULAR LIFE SCIENCES (2008)
Improved detection of overrepresentation of Gene-Ontology annotations with parentchild analysis
Steffen Grossmann et al.
BIOINFORMATICS (2007)
Tyrosine-sulfated glycopeptide involved in cellular proliferation and expansion in Arabidopsis
Yukari Amano et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
The nonsynonymous/synonymous substitution rate ratio versus the radical/conservative replacement rate ratio in the evolution of mammalian genes
Kousuke Hanada et al.
MOLECULAR BIOLOGY AND EVOLUTION (2007)
PAML 4: Phylogenetic analysis by maximum likelihood
Ziheng Yang
MOLECULAR BIOLOGY AND EVOLUTION (2007)
The secretory peptide gene EPF1 enforces the stomatal one-cell-spacing rule
Kenta Hara et al.
GENES & DEVELOPMENT (2007)
A large number of novel coding small open reading frames in the intergenic regions of the Arabidopsis thaliana genome are transcribed and/or under purifying selection
Kousuke Hanada et al.
GENOME RESEARCH (2007)
In search of the small ones:: improved prediction of short exons in vertebrates, plants, fungi and protists
Yvan Saeys et al.
BIOINFORMATICS (2007)
The FOX hunting system: an alternative gain-of-function gene hunting technique
Takanari Ichikawa et al.
PLANT JOURNAL (2006)
Improved scoring of functional groups from gene expression data by decorrelating GO graph structure
Adrian Alexa et al.
BIOINFORMATICS (2006)
An endogenous peptide signal in Arabidopsis activates components of the innate immune response
Alisa Huffaker et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
BRICK1/HSPC300 functions with SCAR and the ARP2/3 complex to regulate epidermal cell shape in Arabidopsis
S Djakovic et al.
DEVELOPMENT (2006)
Functional genomics of genes with small open reading frames (sORFs) in S-cerevisiae
JP Kastenmayer et al.
GENOME RESEARCH (2006)
Genome organization of more than 300 defensin-like genes in arabidopsis
KAT Silverstein et al.
PLANT PHYSIOLOGY (2005)
DVL, a novel class of small polypeptides:: overexpression alters Arabidopsis development
JQ Wen et al.
PLANT JOURNAL (2004)
Overexpression of a novel small peptide ROTUNDIFOLIA4 decreases cell proliferation and alters leaf shape in Arabidopsis thaliana
NN Narita et al.
PLANT JOURNAL (2004)
INFLORESCENCE DEFICIENT IN ABSCISSION controls floral organ abscission in arabidopsis and identifies a novel family of putative ligands in plants
MA Butenko et al.
PLANT CELL (2003)
Regulation of fungal gene expression via short open reading frames in the mRNA 5′untranslated region
C Vilela et al.
MOLECULAR MICROBIOLOGY (2003)
TAPETUM DETERMINANT1 is required for cell specialization in the Arabidopsis anther
SL Yang et al.
PLANT CELL (2003)
Soybean ENOD40 encodes two peptides that bind to sucrose synthase
H Röhrig et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
Diversity of Arabidopsis genes encoding precursors for phytosulfokine, a peptide growth factor
HP Yang et al.
PLANT PHYSIOLOGY (2001)
RALF, a 5-kDa ubiquitous polypeptide in plants, arrests root growth and development
G Pearce et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)
The pollen determinant of self-incompatibility in Brassica campestris
S Takayama et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)