4.8 Article

Allosteric networks in thrombin distinguish procoagulant vs. anticoagulant activities

Related references

Note: Only part of the references are listed.
Article Biophysics

The Dynamic Structure of Thrombin in Solution

Brian Fuglestad et al.

BIOPHYSICAL JOURNAL (2012)

Article Chemistry, Physical

Exploring Residue Component Contributions to Dynamical Network Models of Allostery

Adam T. VanWart et al.

JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2012)

Article Chemistry, Physical

Structural and Entropic Allosteric Signal Transduction Strength via Correlated Motions

Dong Long et al.

JOURNAL OF PHYSICAL CHEMISTRY LETTERS (2012)

Article Multidisciplinary Sciences

Allosteric pathways in imidazole glycerol phosphate synthase

Ivan Rivalta et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Biochemistry & Molecular Biology

Thermodynamic Compensation upon Binding to Exosite 1 and the Active Site of Thrombin

Nicholas A. Treuheit et al.

BIOCHEMISTRY (2011)

Review Biochemistry & Molecular Biology

Protein dynamics and allostery: an NMR view

Shiou-Ru Tzeng et al.

CURRENT OPINION IN STRUCTURAL BIOLOGY (2011)

Article Chemistry, Physical

Studying functional dynamics in bio-molecules using accelerated molecular dynamics

Phineus R. L. Markwick et al.

PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2011)

Article Multidisciplinary Sciences

Dynamical networks in tRNA: protein complexes

Anurag Sethi et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Biochemistry & Molecular Biology

Mutations in the fourth EGF-like domain affect thrombomodulin-induced changes in the active site of thrombin

Julia R. Koeppe et al.

BIOCHEMISTRY (2008)

Review Biochemistry & Molecular Biology

Thrombin

Enrico Di Cera

MOLECULAR ASPECTS OF MEDICINE (2008)

Article Chemistry, Physical

Sampling of slow diffusive conformational transitions with accelerated molecular dynamics

Donald Hamelberg et al.

JOURNAL OF CHEMICAL PHYSICS (2007)

Article Biochemistry & Molecular Biology

Comparison of multiple amber force fields and development of improved protein backbone parameters

Viktor Hornak et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2006)

Article Hematology

Structure and interaction modes of thrombin

W Bode

BLOOD CELLS MOLECULES AND DISEASES (2006)

Article Biochemistry & Molecular Biology

Generalized correlation for biomolecular dynamics

OF Lange et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2006)

Article Biochemistry & Molecular Biology

Thrombomodulin tightens the thrombin active site loops to promote protein C activation

JR Koeppe et al.

BIOCHEMISTRY (2005)

Review Multidisciplinary Sciences

Allosteric mechanisms of signal transduction

JP Changeux et al.

SCIENCE (2005)

Article Chemistry, Physical

Accelerated molecular dynamics: A promising and efficient simulation method for biomolecules

D Hamelberg et al.

JOURNAL OF CHEMICAL PHYSICS (2004)

Review Biochemistry & Molecular Biology

GROMACS 3.0: a package for molecular simulation and trajectory analysis

E Lindahl et al.

JOURNAL OF MOLECULAR MODELING (2001)

Article Multidisciplinary Sciences

Structural basis for the anticoagulant activity of the thrombin-thrombomodulin complex

P Fuentes-Prior et al.

NATURE (2000)