4.8 Article

Construction of regulatory networks using expression time-series data of a genotyped population

Related references

Note: Only part of the references are listed.
Article Statistics & Probability

SPARSE REGULATORY NETWORKS

Gareth M. James et al.

ANNALS OF APPLIED STATISTICS (2010)

Article Multidisciplinary Sciences

The Genetic Landscape of a Cell

Michael Costanzo et al.

SCIENCE (2010)

Article Computer Science, Theory & Methods

Model uncertainty and variable selection in Bayesian lasso regression

Chris Hans

STATISTICS AND COMPUTING (2010)

Article Mathematics, Interdisciplinary Applications

Evolutionary Stochastic Search for Bayesian Model Exploration

Leonard Bottolo et al.

BAYESIAN ANALYSIS (2010)

Article Mathematical & Computational Biology

Variable selection and dependency networks for genomewide data

Adrian Dobra

BIOSTATISTICS (2009)

Article Biochemistry & Molecular Biology

High-resolution DNA-binding specificity analysis of yeast transcription factors

Cong Zhu et al.

GENOME RESEARCH (2009)

Article Multidisciplinary Sciences

Comprehensive polymorphism survey elucidates population structure of Saccharomyces cerevisiae

Joseph Schacherer et al.

NATURE (2009)

Review Multidisciplinary Sciences

Molecular networks as sensors and drivers of common human diseases

Eric E. Schadt

NATURE (2009)

Article Multidisciplinary Sciences

Population genomics of domestic and wild yeasts

Gianni Liti et al.

NATURE (2009)

Article Genetics & Heredity

Learning a Prior on Regulatory Potential from eQTL Data

Su-In Lee et al.

PLOS GENETICS (2009)

Article Statistics & Probability

BAYESIAN VARIABLE SELECTION AND DATA INTEGRATION FOR BIOLOGICAL REGULATORY NETWORKS

Shane T. Jensen et al.

ANNALS OF APPLIED STATISTICS (2007)

Article Statistics & Probability

Shotgun Stochastic search for Large p regression

Chris Hans et al.

JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION (2007)

Article Biochemistry & Molecular Biology

NCBI GEO: mining tens of millions of expression profiles - database and tools update

Tanya Barrett et al.

NUCLEIC ACIDS RESEARCH (2007)

Article Multidisciplinary Sciences

Identifying regulatory mechanisms using individual variation reveals key role for chromatin modification

Su-In Lee et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Article Multidisciplinary Sciences

A systems approach to mapping DNA damage response pathways

CT Workman et al.

SCIENCE (2006)

Article Biochemistry & Molecular Biology

BioGRID: a general repository for interaction datasets

Chris Stark et al.

NUCLEIC ACIDS RESEARCH (2006)

Article Biochemistry & Molecular Biology

The YEASTRACT database: a tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiae

Miguel C. Teixeira et al.

NUCLEIC ACIDS RESEARCH (2006)

Article Multidisciplinary Sciences

The landscape of genetic complexity across 5,700 gene expression traits in yeast

RB Brem et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Article Biochemistry & Molecular Biology

A general framework for weighted gene co-expression network analysis

Bin Zhang et al.

STATISTICAL APPLICATIONS IN GENETICS AND MOLECULAR BIOLOGY (2005)

Review Genetics & Heredity

Applied bioinformatics for the identification of regulatory elements

WW Wasserman et al.

NATURE REVIEWS GENETICS (2004)

Article Multidisciplinary Sciences

Transcriptional regulatory code of a eukaryotic genome

CT Harbison et al.

NATURE (2004)

Article Biotechnology & Applied Microbiology

From co-expression to co-regulation: how many microarray experiments do we need?

KY Yeung et al.

GENOME BIOLOGY (2004)

Article Mathematical & Computational Biology

Exploration, normalization, and summaries of high density oligonucleotide array probe level data

RA Irizarry et al.

BIOSTATISTICS (2003)

Article Biochemistry & Molecular Biology

TRANSFAC (R): transcriptional regulation, from patterns to profiles

V Matys et al.

NUCLEIC ACIDS RESEARCH (2003)

Article Biochemistry & Molecular Biology

ArrayExpress - a public repository for microarray gene expression data at the EBI

A Brazma et al.

NUCLEIC ACIDS RESEARCH (2003)

Article Mathematical & Computational Biology

Variable selection and Bayesian model averaging in case-control studies

V Viallefont et al.

STATISTICS IN MEDICINE (2001)

Article Genetics & Heredity

A literature network of human genes for high-throughput analysis of gene expression

TK Jenssen et al.

NATURE GENETICS (2001)

Article Cell Biology

Genomic expression programs in the response of yeast cells to environmental changes

AP Gasch et al.

MOLECULAR BIOLOGY OF THE CELL (2000)

Article Biochemistry & Molecular Biology

Functional discovery via a compendium of expression profiles

TR Hughes et al.

Article Biochemical Research Methods

Using Bayesian networks to analyze expression data

N Friedman et al.

JOURNAL OF COMPUTATIONAL BIOLOGY (2000)

Article Biology

Bayesian information criterion for censored survival models

CT Volinsky et al.

BIOMETRICS (2000)