Related references
Note: Only part of the references are listed.High Nucleosome Occupancy Is Encoded at Human Regulatory Sequences
Desiree Tillo et al.
PLOS ONE (2010)
An ensemble model of competitive multi-factor binding of the genome
Todd Wasson et al.
GENOME RESEARCH (2009)
Incorporating nucleosomes into thermodynamic models of transcription regulation
Tali Raveh-Sadka et al.
GENOME RESEARCH (2009)
The DNA-encoded nucleosome organization of a eukaryotic genome
Noam Kaplan et al.
NATURE (2009)
Using DNA mechanics to predict in vitro nucleosome positions and formation energies
Alexandre V. Morozov et al.
NUCLEIC ACIDS RESEARCH (2009)
Different gene regulation strategies revealed by analysis of binding motifs
Zeba Wunderlich et al.
TRENDS IN GENETICS (2009)
A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning
Anton Valouev et al.
GENOME RESEARCH (2008)
Spontaneous access to DNA target sites in folded chromatin fibers
Michael G. Poirier et al.
JOURNAL OF MOLECULAR BIOLOGY (2008)
Interaction of the glucocorticoid receptor with the chromatin landscape
Sam John et al.
MOLECULAR CELL (2008)
Chromatin decouples promoter threshold from dynamic range
Felix H. Lam et al.
NATURE (2008)
Nucleosome organization in the Drosophila genome
Travis N. Mavrich et al.
NATURE (2008)
A quantitative model of transcription factor-activated gene expression
Harold D. Kim et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2008)
Sepsid even-skipped Enhancers Are Functionally Conserved in Drosophila Despite Lack of Sequence Conservation
Emily E. Hare et al.
PLOS GENETICS (2008)
A high- resolution atlas of nucleosome occupancy in yeast
William Lee et al.
NATURE GENETICS (2007)
Nucleosome positioning signals in genomic DNA
Heather E. Peckham et al.
GENOME RESEARCH (2007)
Automated image analysis of protein localization in budding yeast
Shann-Ching Chen et al.
BIOINFORMATICS (2007)
An atomic model of the interferon-β enhanceosome
Daniel Panne et al.
CELL (2007)
Dynamics of replication-independent histone turnover in budding yeast
Michael F. Dion et al.
SCIENCE (2007)
The role of chromatin during transcription
Bing Li et al.
CELL (2007)
A systems approach to measuring the binding energy landscapes of transcription factors
Sebastian J. Maerkl et al.
SCIENCE (2007)
Large-scale turnover of functional transcription factor binding sites in Drosophila
Alan M. Moses et al.
PLOS COMPUTATIONAL BIOLOGY (2006)
Nucleosome positions predicted through comparative genomics
Ilya P. Ioshikhes et al.
NATURE GENETICS (2006)
A genomic code for nucleosome positioning
Eran Segal et al.
NATURE (2006)
Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays
Peter J. Sabo et al.
NATURE METHODS (2006)
Receptor-receptor coupling in bacterial chemotaxis: Evidence for strongly coupled clusters
Monica L. Skoge et al.
BIOPHYSICAL JOURNAL (2006)
A clustering property of highly-degenerate transcription factor binding sites in the mammalian genome
Chaolin Zhang et al.
NUCLEIC ACIDS RESEARCH (2006)
DNA looping: the consequences and its control
Leonor Saiz et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2006)
Bicoid cooperative DNA binding is critical for embryonic patterning in Drosophila
D Lebrecht et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Allosteric mechanisms of signal transduction
JP Changeux et al.
SCIENCE (2005)
Comparative binding of p53 to its promoter and DNA recognition elements
RL Weinberg et al.
JOURNAL OF MOLECULAR BIOLOGY (2005)
Transcriptional regulation by the numbers: models
L Bintu et al.
CURRENT OPINION IN GENETICS & DEVELOPMENT (2005)
Transcriptional enhancers: Intelligent enhanceosomes or flexible billboards?
DN Arnosti et al.
JOURNAL OF CELLULAR BIOCHEMISTRY (2005)
Rapid spontaneous accessibility of nucleosomal DNA
G Li et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2005)
Transcriptional control in the segmentation gene network of Drosophila
MD Schroeder et al.
PLOS BIOLOGY (2004)
Nucleosomes facilitate their own invasion
G Li et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2004)
Evidence for nucleosome depletion at active regulatory regions genome-wide
CK Lee et al.
NATURE GENETICS (2004)
Global nature of dynamic protein-chromatin interactions in vivo:: Three-dimensional genome scanning and dynamic interaction networks of chromatin proteins
RD Phair et al.
MOLECULAR AND CELLULAR BIOLOGY (2004)
Discovery of functional noncoding elements by digital analysis of chromatin structure
PJ Sabo et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura
BP Berman et al.
GENOME BIOLOGY (2004)
A probabilistic method to detect regulatory modules
Saurabh Sinha et al.
BIOINFORMATICS (2003)
Getting into chromatin: how do transcription factors get past the histones?
RH Morse
BIOCHEMISTRY AND CELL BIOLOGY (2003)
Collaborative competition mechanism for gene activation in vivo
JA Miller et al.
MOLECULAR AND CELLULAR BIOLOGY (2003)
Sequence and position-dependence of the equilibrium accessibility of nucleosomal DNA target sites
JD Anderson et al.
JOURNAL OF MOLECULAR BIOLOGY (2000)