4.8 Article

Protein structural dynamics in solution unveiled via 100-ps time-resolved x-ray scattering

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NATL ACAD SCIENCES
DOI: 10.1073/pnas.1002951107

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Funding

  1. BioCARS
  2. CARS
  3. US Department of Energy, Basic Energy Sciences, Office of Science [DE-AC02-06CH11357]
  4. National Institutes of Health (NIH), National Center for Research Resources [RR007707]
  5. NIH, National Institute of Diabetes and Digestive and Kidney Diseases

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We have developed a time-resolved x-ray scattering diffractometer capable of probing structural dynamics of proteins in solution with 100-ps time resolution. This diffractometer, developed on the ID14B BioCARS (Consortium for Advanced Radiation Sources) beamline at the Advanced Photon Source, records x-ray scattering snapshots over a broad range of q spanning 0.02-2.5 angstrom(-1), thereby providing simultaneous coverage of the small-angle x-ray scattering (SAXS) and wide-angle x-ray scattering (WAXS) regions. To demonstrate its capabilities, we have tracked structural changes in myoglobin as it undergoes a photolysis-induced transition from its carbon monoxy form (MbCO) to its deoxy form (Mb). Though the differences between the MbCO and Mb crystal structures are small (rmsd <0.2 angstrom), time-resolved x-ray scattering differences recorded over 8 decades of time from 100 ps to 10 ms are rich in structure, illustrating the sensitivity of this technique. A strong, negative-going feature in the SAXS region appears promptly and corresponds to a sudden >22 angstrom(3) volume expansion of the protein. The ensuing conformational relaxation causes the protein to contract to a volume similar to 2 angstrom(3) larger than MbCO within similar to 10 ns. On the timescale for CO escape from the primary docking site, another change in the SAXS/WAXS fingerprint appears, demonstrating sensitivity to the location of the dissociated CO. Global analysis of the SAXS/WAXS patterns recovered time-independent scattering fingerprints for four intermediate states of Mb. These SAXS/WAXS fingerprints provide stringent constraints for putative models of conformational states and structural transitions between them.

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