Related references
Note: Only part of the references are listed.Promoter methylation regulates the abundance of osa-miR393a in contrasting rice genotypes under salinity stress
Showkat Ahmad Ganie et al.
FUNCTIONAL & INTEGRATIVE GENOMICS (2016)
Assessment of genetic diversity of Saltol QTL among the rice (Oryza sativa L.) genotypes
Showkat Ahmad Ganie et al.
PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS (2016)
Histone chaperones in Arabidopsis and rice: genome-wide identification, phylogeny, architecture and transcriptional regulation
Amit K. Tripathi et al.
BMC PLANT BIOLOGY (2015)
Identification and analysis of novel salt responsive candidate gene based SSRs (cgSSRs) from rice (Oryza sativa L.)
Kutubuddin Ali Molla et al.
BMC PLANT BIOLOGY (2015)
Genome-wide survey and expression analysis of the OSCA gene family in rice
Yunshuang Li et al.
BMC PLANT BIOLOGY (2015)
Genome-wide development of novel miRNA-based microsatellite markers of rice (Oryza sativa) for genotyping applications
Showkat Ahmad Ganie et al.
MOLECULAR BREEDING (2015)
Comprehensive Evolutionary and Expression Analysis of FCS-Like Zinc finger Gene Family Yields Insights into Their Origin, Expansion and Divergence
Muhammed K. Jamsheer et al.
PLOS ONE (2015)
Genome-Wide Identification and Expression Profiling Analysis of ZmPIN, ZmPILS, ZmLAX and ZmABCB Auxin Transporter Gene Families in Maize (Zea mays L.) under Various Abiotic Stresses
Runqing Yue et al.
PLOS ONE (2015)
Genome-wide investigation and expression analysis of Sodium/Calcium exchanger gene family in rice and Arabidopsis
Anil Kumar Singh et al.
RICE (2015)
Global Identification of MicroRNAs and Their Targets in Barley under Salinity Stress
Pingchuan Deng et al.
PLOS ONE (2015)
Protter: interactive protein feature visualization and integration with experimental proteomic data
Ulrich Omasits et al.
BIOINFORMATICS (2014)
DUF221 proteins are a family of osmosensitive calcium-permeable cation channels conserved across eukaryotes
Congcong Hou et al.
CELL RESEARCH (2014)
Comprehensive Expression Analysis of Rice Armadillo Gene Family During Abiotic Stress and Development
Manisha Sharma et al.
DNA RESEARCH (2014)
Identification and characterization of salt responsive miRNA-SSR markers in rice (Oryza sativa)
Tapan Kumar Mondal et al.
GENE (2014)
X-ray structure of a calcium-activated TMEM16 lipid scramblase
Janine D. Brunner et al.
NATURE (2014)
OSCA1 mediates osmotic-stress-evoked Ca2+ increases vital for osmosensing in Arabidopsis
Fang Yuan et al.
NATURE (2014)
miRBase: annotating high confidence microRNAs using deep sequencing data
Ana Kozomara et al.
NUCLEIC ACIDS RESEARCH (2014)
Genome-wide Analysis of Zinc Transporter Genes of Maize (Zea mays)
Tapan Kumar Mondal et al.
PLANT MOLECULAR BIOLOGY REPORTER (2014)
Assessment of genetic diversity in salt-tolerant rice and its wild relatives for ten SSR loci and one allele mining primer of salT gene located on 1st chromosome
Showkat Ahmad Ganie et al.
PLANT SYSTEMATICS AND EVOLUTION (2014)
Protein Domains of Unknown Function Are Essential in Bacteria
Norman F. Goodacre et al.
MBIO (2014)
A vacuolar membrane protein affects drastically the biosynthesis of the ACV tripeptide and the beta-lactam pathway of Penicillium chrysogenum
Marta Fernandez-Aguado et al.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2013)
MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
Koichiro Tamura et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
Identification of virulence genes in the crucifer anthracnose fungus Colletotrichum higginsianum by insertional mutagenesis
Liping Liu et al.
MICROBIAL PATHOGENESIS (2013)
PGDD: a database of gene and genome duplication in plants
Tae-Ho Lee et al.
NUCLEIC ACIDS RESEARCH (2013)
Complexity of the Alternative Splicing Landscape in Plants
Anireddy S. N. Reddy et al.
PLANT CELL (2013)
Multiple-to-Multiple Relationships between MicroRNAs and Target Genes in Gastric Cancer
Yutaka Hashimoto et al.
PLOS ONE (2013)
Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying Oryza genome evolution
Jinfeng Chen et al.
NATURE COMMUNICATIONS (2013)
Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data
Yoshihiro Kawahara et al.
RICE (2013)
Salt overly sensitive pathway members are influenced by diurnal rhythm in rice
Praveen Soni et al.
PLANT SIGNALING & BEHAVIOR (2013)
Genome-wide classification and expression analysis of MYB transcription factor families in rice and Arabidopsis
Amit Katiyar et al.
BMC GENOMICS (2012)
Clustered metallothionein genes are co-regulated in rice and ectopic expression of OsMT1e-P confers multiple abiotic stress tolerance in tobacco via ROS scavenging
Gautam Kumar et al.
BMC PLANT BIOLOGY (2012)
Novel miRNAs in the control of arsenite levels in rice
Qingpo Liu
FUNCTIONAL & INTEGRATIVE GENOMICS (2012)
Comparative transcriptome analysis of AP2/EREBP gene family under normal and hormone treatments, and under two drought stresses in NILs setup by Aday Selection and IR64
Akhter Most Sharoni et al.
MOLECULAR GENETICS AND GENOMICS (2012)
Phytozome: a comparative platform for green plant genomics
David M. Goodstein et al.
NUCLEIC ACIDS RESEARCH (2012)
The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools
Philippe Lamesch et al.
NUCLEIC ACIDS RESEARCH (2012)
Membrane Topology and Predicted RNA-Binding Function of the 'Early Responsive to Dehydration (ERD4)' Plant Protein
Archana Rai et al.
PLOS ONE (2012)
Genome-wide Comparative Analysis of Annexin Superfamily in Plants
Sravan Kumar Jami et al.
PLOS ONE (2012)
Bioinformatic Analysis of Epigenetic and MicroRNA Mediated Regulation of Drought Responsive Genes in Rice
Rafi Shaik et al.
PLOS ONE (2012)
RsfA (YbeB) Proteins Are Conserved Ribosomal Silencing Factors
Roman Haeuser et al.
PLOS GENETICS (2012)
Proteomic identification of OsCYP2, a rice cyclophilin that confers salt tolerance in rice (Oryza sativa L.) seedlings when overexpressed
Song-Lin Ruan et al.
BMC PLANT BIOLOGY (2011)
Genome-wide analysis of rice and Arabidopsis identifies two glyoxalase genes that are highly expressed in abiotic stresses
Ananda Mustafiz et al.
FUNCTIONAL & INTEGRATIVE GENOMICS (2011)
Effects of abscisic acid on ethylene biosynthesis and perception in Hibiscus rosa-sinensis L. flower development
Alice Trivellini et al.
JOURNAL OF EXPERIMENTAL BOTANY (2011)
The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored
Damian Szklarczyk et al.
NUCLEIC ACIDS RESEARCH (2011)
psRNATarget: a plant small RNA target analysis server
Xinbin Dai et al.
NUCLEIC ACIDS RESEARCH (2011)
Coping with Stresses: Roles of Calcium- and Calcium/Calmodulin-Regulated Gene Expression
Anireddy S. N. Reddy et al.
PLANT CELL (2011)
Breaking the code: Ca2+ sensors in plant signalling
Thomas A. DeFalco et al.
BIOCHEMICAL JOURNAL (2010)
Soil processes affecting crop production in salt-affected soils
Pichu Rengasamy
FUNCTIONAL PLANT BIOLOGY (2010)
Overexpression of OsVP1 and OsNHX1 Increases Tolerance to Drought and Salinity in Rice
Shiping Liu et al.
JOURNAL OF PLANT BIOLOGY (2010)
Multiple microRNAs modulate p21Cip1/Waf1 expression by directly targeting its 3 ' untranslated region
S. Wu et al.
ONCOGENE (2010)
AmiGO: online access to ontology and annotation data
Seth Carbon et al.
BIOINFORMATICS (2009)
Genome wide expression analysis of CBS domain containing proteins in Arabidopsis thaliana (L.) Heynh and Oryza sativa L. reveals their developmental and stress regulation
Hemant R. Kushwaha et al.
BMC GENOMICS (2009)
Gene duplication and evolutionary novelty in plants
Lex E. Flagel et al.
NEW PHYTOLOGIST (2009)
Gene structures and processing of Arabidopsis thaliana HYL1-dependent pri-miRNAs
Bogna Szarzynska et al.
NUCLEIC ACIDS RESEARCH (2009)
Quantifying the three main components of salinity tolerance in cereals
Karthika Rajendran et al.
PLANT CELL AND ENVIRONMENT (2009)
Identification and expression profiling analysis of TIFY family genes involved in stress and phytohormone responses in rice
Haiyan Ye et al.
PLANT MOLECULAR BIOLOGY (2009)
Plants with double genomes might have had a better chance to survive the Cretaceous-Tertiary extinction event
Jeffrey A. Fawcett et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Identification of novel and candidate miRNAs in rice by high throughput sequencing
Ramanjulu Sunkar et al.
BMC PLANT BIOLOGY (2008)
Expression cloning of TMEM16A as a calcium-activated chloride channel subunit
Bjoern Christian Schroeder et al.
CELL (2008)
Expression analysis of the calcineurin B-like gene family in rice (Oryza sativa L.) under environmental stresses
Zhimin Gu et al.
GENE (2008)
Comparative analysis of the MIR319a MicroRNA locus in Arabidopsis and related Brassicaceae
Norman Warthmann et al.
MOLECULAR BIOLOGY AND EVOLUTION (2008)
Systematic sequence analysis and identification of tissue-specific or stress-responsive genes of NAC transcription factor family in rice
Yujie Fang et al.
MOLECULAR GENETICS AND GENOMICS (2008)
A comprehensive transcriptional profiling of the WRKY gene family in rice under various abiotic and phytohormone treatments
Rengasamy Ramamoorthy et al.
PLANT AND CELL PHYSIOLOGY (2008)
Expression analysis of calcium-dependent protein kinase gene family during reproductive development and abiotic stress conditions in rice (Oryza sativa L. ssp indica)
Swatismita Ray et al.
MOLECULAR GENETICS AND GENOMICS (2007)
The complex history of the domestication of rice
Megan Sweeney et al.
ANNALS OF BOTANY (2007)
MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress
Rita Arora et al.
BMC GENOMICS (2007)
Rice mitogen-activated protein kinase gene family and its role in biotic and abiotic stress response
Jai S. Rohila et al.
JOURNAL OF INTEGRATIVE PLANT BIOLOGY (2007)
F-box proteins in rice. Genome-wide analysis, classification, temporal and spatial gene expression during panicle and seed development, and regulation by light and abiotic stress
Mukesh Jain et al.
PLANT PHYSIOLOGY (2007)
Redundancy and specialization among plant microRNAs:: role of the MIR164 family in developmental robustness
Patrick Sieber et al.
DEVELOPMENT (2007)
Genome-wide analysis of the stress associated protein (SAP) gene family containing A20/AN1 zinc-finger(s) in rice and their phylogenetic relationship with Arabidopsis
Shubha Vij et al.
MOLECULAR GENETICS AND GENOMICS (2006)
Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development
Yu-Chun Luo et al.
FEBS LETTERS (2006)
MEME: discovering and analyzing DNA and protein sequence motifs
Timothy L. Bailey et al.
NUCLEIC ACIDS RESEARCH (2006)
The rice 14-3-3 gene family and its involvement in responses to biotic and abiotic stress
Fang Chen et al.
DNA RESEARCH (2006)
Expression and functional analysis of the rice plasma-membrane intrinsic protein gene family
Lei Guo et al.
CELL RESEARCH (2006)
Gramene: a bird's eye view of cereal genomes
Pankaj Jaiswal et al.
NUCLEIC ACIDS RESEARCH (2006)
Duplication and DNA segmental loss in the rice genome: implications for diploidization
XY Wang et al.
NEW PHYTOLOGIST (2005)
The Genomes of Oryza sativa:: A history of duplications
J Yu et al.
PLOS BIOLOGY (2005)
Differential activation of the rice sucrose nonfermenting1-related protein kinase2 family by hyperosmotic stress and abscisic acid
Y Kobayashi et al.
PLANT CELL (2004)
Widespread paleopolyploidy in model plant species inferred from age distributions of duplicate genes
G Blanc et al.
PLANT CELL (2004)
VISTA: computational tools for comparative genomics
KA Frazer et al.
NUCLEIC ACIDS RESEARCH (2004)
Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics
AH Paterson et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
MicroRNA genes are transcribed by RNA polymerase II
Y Lee et al.
EMBO JOURNAL (2004)
WebLogo: A sequence logo generator
GE Crooks et al.
GENOME RESEARCH (2004)
Die and let live: leaf senescence contributes to plant survival under drought stress
S Munne-Bosch et al.
FUNCTIONAL PLANT BIOLOGY (2004)
OsDREB genes in rice, Oryza sativa L., encode transcription activators that function in drought-, high-salt- and cold-responsive gene expression
JG Dubouzet et al.
PLANT JOURNAL (2003)
Arabidopsis AtMYC2 (bHLH) and AtMYB2 (MYB) function as transcriptional activators in abscisic acid signaling
H Abe et al.
PLANT CELL (2003)
Two different novel cis-acting elements of erd1, a clpA homologous Arabidopsis gene function in induction by dehydration stress and dark-induced senescence
SD Simpson et al.
PLANT JOURNAL (2003)
Genome-wide comparative phylogenetic analysis of the rice and Arabidopsis Dof gene families
D Lijavetzky et al.
BMC EVOLUTIONARY BIOLOGY (2003)
Rapid divergence in expression between duplicate genes inferred from microarray data
ZL Gu et al.
TRENDS IN GENETICS (2002)
Splitting pairs: The diverging fates of duplicated genes
VE Prince et al.
NATURE REVIEWS GENETICS (2002)
MapChart: Software for the graphical presentation of linkage maps and QTLs
RE Voorrips
JOURNAL OF HEREDITY (2002)
Directed evolution of proteins by exon shuffling
JA Kolkman et al.
NATURE BIOTECHNOLOGY (2001)
The evolutionary fate and consequences of duplicate genes
M Lynch et al.
SCIENCE (2000)
Dual action of the active oxygen species during plant stress responses
J Dat et al.
CELLULAR AND MOLECULAR LIFE SCIENCES (2000)