4.6 Article

DNA-Based Taxonomy in Ecologically Versatile Microalgae: A Re-Evaluation of the Species Concept within the Coccoid Green Algal Genus Coccomyxa (Trebouxiophyceae, Chlorophyta)

Related references

Note: Only part of the references are listed.
Review Plant Sciences

DNA- based species delimitation in algae

Frederik Leliaert et al.

EUROPEAN JOURNAL OF PHYCOLOGY (2014)

Article Biochemistry & Molecular Biology

Integrating coalescent and phylogenetic approaches to delimit species in the lichen photobiont Trebouxia

Anna D. Sadowska-Des et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2014)

Article Biochemical Research Methods

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

Remco Bouckaert et al.

PLOS COMPUTATIONAL BIOLOGY (2014)

Article Biochemical Research Methods

A general species delimitation method with applications to phylogenetic placements

Jiajie Zhang et al.

BIOINFORMATICS (2013)

Article Chemistry, Multidisciplinary

An extremely radioresistant green eukaryote for radionuclide bio-decontamination in the nuclear industry

Corinne Rivasseau et al.

ENERGY & ENVIRONMENTAL SCIENCE (2013)

Review Biochemistry & Molecular Biology

How to fail at species delimitation

Bryan C. Carstens et al.

MOLECULAR ECOLOGY (2013)

Article Biology

Extensive cryptic species diversity and fine-scale endemism in the marine red alga Portieria in the Philippines

Dioli Ann Payo et al.

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2013)

Review Plant Sciences

Phylogeny and Molecular Evolution of the Green Algae

Frederik Leliaert et al.

CRITICAL REVIEWS IN PLANT SCIENCES (2012)

Article Marine & Freshwater Biology

Present state of the systematics of planktonic coccoid green algae of inland waters

Lothar Krienitz et al.

HYDROBIOLOGIA (2012)

Article Biochemistry & Molecular Biology

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

Alexei J. Drummond et al.

MOLECULAR BIOLOGY AND EVOLUTION (2012)

Article Biochemistry & Molecular Biology

ABGD, Automatic Barcode Gap Discovery for primary species delimitation

N. Puillandre et al.

MOLECULAR ECOLOGY (2012)

Article Biochemistry & Molecular Biology

Large-scale species delimitation method for hyperdiverse groups

N. Puillandre et al.

MOLECULAR ECOLOGY (2012)

Letter Biochemical Research Methods

jModelTest 2: more models, new heuristics and parallel computing

Diego Darriba et al.

NATURE METHODS (2012)

Article Biology

Single-locus species delimitation: a test of the mixed Yule-coalescent model, with an empirical application to Philippine round-leaf bats

Jacob A. Esselstyn et al.

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2012)

Article Evolutionary Biology

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

Fredrik Ronquist et al.

SYSTEMATIC BIOLOGY (2012)

Article Ecology

Coalescent-based species delimitation in an integrative taxonomy

Matthew K. Fujita et al.

TRENDS IN ECOLOGY & EVOLUTION (2012)

Article Biochemical Research Methods

phangorn: phylogenetic analysis in R

Klaus Peter Schliep

BIOINFORMATICS (2011)

Article Evolutionary Biology

Structurama: Bayesian Inference of Population Structure

John P. Huelsenbeck et al.

EVOLUTIONARY BIOINFORMATICS (2011)

Article Biochemistry & Molecular Biology

Phylogenetic relationships in Interfilum and Klebsormidium (Klebsormidiophyceae, Streptophyta)

Fabio Rindi et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2011)

Article Biochemistry & Molecular Biology

CpDNA-based species identification and phylogeography: application to African tropical tree species

J. Duminil et al.

MOLECULAR ECOLOGY (2010)

Article Biochemistry & Molecular Biology

Delimiting species boundaries within the Neotropical bamboo Otatea (Poaceae: Bambusoideae) using molecular, morphological and ecological data

Eduardo Ruiz-Sanchez et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2010)

Article Multidisciplinary Sciences

Bayesian species delimitation using multilocus sequence data

Ziheng Yang et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Evolutionary Biology

Species delimitation and phylogeny of a New Zealand plant species radiation

Heidi M. Meudt et al.

BMC EVOLUTIONARY BIOLOGY (2009)

Review Biochemistry & Molecular Biology

Is there a molecular key to the level of biological species in eukaryotes? A DNA guide

Annette W. Coleman

MOLECULAR PHYLOGENETICS AND EVOLUTION (2009)

Article Biochemistry & Molecular Biology

DNA taxonomy in morphologically plastic taxa: Algorithmic species delimitation in the Boodlea complex (Chlorophyta: Cladophorales)

Frederik Leliaert et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2009)

Article Evolutionary Biology

Can mtDNA Barcodes Be Used to Delimit Species? A Response to Pons et al. (2006)

Konrad Lohse

SYSTEMATIC BIOLOGY (2009)

Article Evolutionary Biology

Accelerated Species Inventory on Madagascar Using Coalescent-Based Models of Species Delineation

Michael T. Monaghan et al.

SYSTEMATIC BIOLOGY (2009)

Article Biochemical Research Methods

Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations

Jukka Corander et al.

BMC BIOINFORMATICS (2008)

Article Biodiversity Conservation

Diversity and geographic distribution of desmids and other coccoid green algae

Peter F. M. Coesel et al.

BIODIVERSITY AND CONSERVATION (2008)

Article Evolutionary Biology

Species concepts and species delimitation

Kevin De Queiroz

SYSTEMATIC BIOLOGY (2007)

Article Computer Science, Interdisciplinary Applications

The ade4 package: Implementing the duality diagram for ecologists

Stephane Dray et al.

JOURNAL OF STATISTICAL SOFTWARE (2007)

Article Evolutionary Biology

Sequence-based species delimitation for the DNA taxonomy of undescribed insects

Joan Pons et al.

SYSTEMATIC BIOLOGY (2006)

Article Biochemistry & Molecular Biology

DNA barcoding: Error rates based on comprehensive sampling

CP Meyer et al.

PLOS BIOLOGY (2005)

Article Evolutionary Biology

Unearthing the molecular phylodiversity of desert soil green algae (Chlorophyta)

LA Lewis et al.

SYSTEMATIC BIOLOGY (2005)

Article Biochemical Research Methods

APE: Analyses of Phylogenetics and Evolution in R language

E Paradis et al.

BIOINFORMATICS (2004)

Article Biology

Biological identifications through DNA barcodes

PDN Hebert et al.

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2003)

Article Biochemistry & Molecular Biology

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

K Katoh et al.

NUCLEIC ACIDS RESEARCH (2002)

Article Biochemistry & Molecular Biology

Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis

J Castresana

MOLECULAR BIOLOGY AND EVOLUTION (2000)