Related references
Note: Only part of the references are listed.Phylogenomics of Phrynosomatid Lizards: Conflicting Signals from Sequence Capture versus Restriction Site Associated DNA Sequencing
Adam D. Leache et al.
GENOME BIOLOGY AND EVOLUTION (2015)
APPLICATIONS OF NEXT-GENERATION SEQUENCING Reconstructing ancient genomes and epigenomes
Ludovic Orlando et al.
NATURE REVIEWS GENETICS (2015)
Restriction site-associated DNA sequencing, genotyping error estimation and de novo assembly optimization for population genetic inference
A. Mastretta-Yanes et al.
MOLECULAR ECOLOGY RESOURCES (2015)
Target enrichment of ultraconserved elements from arthropods provides a genomic perspective on relationships among Hymenoptera
Brant C. Faircloth et al.
MOLECULAR ECOLOGY RESOURCES (2015)
PyRAD: assembly of de novo RADseq loci for phylogenetic analyses
Deren A. R. Eaton
BIOINFORMATICS (2014)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
fastSTRUCTURE: Variational Inference of Population Structure in Large SNP Data Sets
Anil Raj et al.
GENETICS (2014)
Empirical Assessment of RAD Sequencing for Interspecific Phylogeny
Astrid Cruaud et al.
MOLECULAR BIOLOGY AND EVOLUTION (2014)
Demystifying the RAD fad
Jonathan B. Puritz et al.
MOLECULAR ECOLOGY (2014)
Sequencing Degraded DNA from Non-Destructively Sampled Museum Specimens for RAD-Tagging and Low-Coverage Shotgun Phylogenetics
Mandy Man-Ying Tin et al.
PLOS ONE (2014)
A Framework Phylogeny of the American Oak Clade Based on Sequenced RAD Data
Andrew L. Hipp et al.
PLOS ONE (2014)
Hybridization Capture Using Short PCR Products Enriches Small Genomes by Capturing Flanking Sequences (CapFlank)
Kyriakos Tsangaras et al.
PLOS ONE (2014)
Genome sequencing and population genomics in non-model organisms
Hans Ellegren
TRENDS IN ECOLOGY & EVOLUTION (2014)
mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters
Hakon Jonsson et al.
BIOINFORMATICS (2013)
The effect of RAD allele dropout on the estimation of genetic variation within and between populations
Mathieu Gautier et al.
MOLECULAR ECOLOGY (2013)
Special features of RAD Sequencing data: implications for genotyping
John W. Davey et al.
MOLECULAR ECOLOGY (2013)
Genome-wide RAD sequence data provide unprecedented resolution of species boundaries and relationships in the Lake Victoria cichlid adaptive radiation
Catherine E. Wagner et al.
MOLECULAR ECOLOGY (2013)
Unlocking the vault: next-generation museum population genomics
Ke Bi et al.
MOLECULAR ECOLOGY (2013)
The evolutionary history of Xiphophorus fish and their sexually selected sword: a genome-wide approach using restriction site-associated DNA sequencing
Julia C. Jones et al.
MOLECULAR ECOLOGY (2013)
RADseq underestimates diversity and introduces genealogical biases due to nonrandom haplotype sampling
B. Arnold et al.
MOLECULAR ECOLOGY (2013)
Stacks: an analysis tool set for population genomics
Julian Catchen et al.
MOLECULAR ECOLOGY (2013)
Applications of next-generation sequencing to phylogeography and phylogenetics
John E. McCormack et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2013)
Inferring Phylogeny and Introgression using RADseq Data: An Example from Flowering Plants (Pedicularis: Orobanchaceae)
Deren A. R. Eaton et al.
SYSTEMATIC BIOLOGY (2013)
PRICE: Software for the Targeted Assembly of Components of (Meta) Genomic Sequence Data
J. Graham Ruby et al.
G3-GENES GENOMES GENETICS (2013)
TARGETED ENRICHMENT STRATEGIES FOR NEXT-GENERATION PLANT BIOLOGY
Richard Cronn et al.
AMERICAN JOURNAL OF BOTANY (2012)
PGDSpider: an automated data conversion tool for connecting population genetics and genomics programs
H. E. L. Lischer et al.
BIOINFORMATICS (2012)
Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
Matthew Kearse et al.
BIOINFORMATICS (2012)
Deep phylogeographic divergence and cytonuclear discordance in the grasshopper Oedaleus decorus
Eveline Kindler et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
Inferring Phylogenies from RAD Sequence Data
Benjamin E. R. Rubin et al.
PLOS ONE (2012)
Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species
Brant K. Peterson et al.
PLOS ONE (2012)
Ultraconserved Elements Anchor Thousands of Genetic Markers Spanning Multiple Evolutionary Timescales
Brant C. Faircloth et al.
SYSTEMATIC BIOLOGY (2012)
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
Ruibang Luo et al.
GIGASCIENCE (2012)
The variant call format and VCFtools
Petr Danecek et al.
BIOINFORMATICS (2011)
Efficient cross-species capture hybridization and next-generation sequencing of mitochondrial genomes from noninvasively sampled museum specimens
Victor C. Mason et al.
GENOME RESEARCH (2011)
Museum genomics: low-cost and high-accuracy genetic data from historical specimens
Kevin C. Rowe et al.
MOLECULAR ECOLOGY RESOURCES (2011)
Genome-wide genetic marker discovery and genotyping using next-generation sequencing
John W. Davey et al.
NATURE REVIEWS GENETICS (2011)
DNA Damage in Plant Herbarium Tissue
Martijn Staats et al.
PLOS ONE (2011)
Comparison of solution-based exome capture methods for next generation sequencing
Anna-Maija Sulonen et al.
GENOME BIOLOGY (2011)
Removal of deaminated cytosines and detection of in vivo methylation in ancient DNA
Adrian W. Briggs et al.
NUCLEIC ACIDS RESEARCH (2010)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Detection of single nucleotide variations in expressed exons of the human genome using RNA-Seq
Iouri Chepelev et al.
NUCLEIC ACIDS RESEARCH (2009)
Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers
Nathan A. Baird et al.
PLOS ONE (2008)
Back to the future: museum specimens in population genetics
Peter Wandeler et al.
TRENDS IN ECOLOGY & EVOLUTION (2007)
Patterns of damage in genomic DNA sequences from a Neandertal
Adrian W. Briggs et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Patterns of nucleotide misincorporations during enzymatic amplification and direct large-scale sequencing of ancient DNA
M. Stiller et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
OrthoMCL: Identification of ortholog groups for eukaryotic genomes
L Li et al.
GENOME RESEARCH (2003)
Characterization of genetic miscoding lesions caused by postmortem damage
MTP Gilbert et al.
AMERICAN JOURNAL OF HUMAN GENETICS (2003)
Share Paper
