Related references
Note: Only part of the references are listed.Enhancer Evolution across 20 Mammalian Species
Diego Villar et al.
CELL (2015)
A Generalized Mechanistic Codon Model
Maryam Zaheri et al.
MOLECULAR BIOLOGY AND EVOLUTION (2014)
Patterns of Positive Selection in Seven Ant Genomes
Julien Roux et al.
MOLECULAR BIOLOGY AND EVOLUTION (2014)
The Mouse Genome Database: integration of and access to knowledge about the laboratory mouse
Judith A. Blake et al.
NUCLEIC ACIDS RESEARCH (2014)
Selectome update: quality control and computational improvements to a database of positive selection
Sebastien Moretti et al.
NUCLEIC ACIDS RESEARCH (2014)
Unraveling Patterns of Site-to-Site Synonymous Rates Variation and Associated Gene Properties of Protein Domains and Families
Slavica Dimitrieva et al.
PLOS ONE (2014)
High-Resolution Transcriptome Analysis with Long-Read RNA Sequencing
Hyunghoon Cho et al.
PLOS ONE (2014)
Synonymous Constraint Elements Show a Tendency to Encode Intrinsically Disordered Protein Segments
Mauricio Macossay-Castillo et al.
PLOS COMPUTATIONAL BIOLOGY (2014)
IVT-seq reveals extreme bias in RNA sequencing
Nicholas F. Lahens et al.
GENOME BIOLOGY (2014)
RCytoscape: tools for exploratory network analysis
Paul T. Shannon et al.
BMC BIOINFORMATICS (2013)
Evolution of the Correlation between Expression Divergence and Protein Divergence in Mammals
Maria Warnefors et al.
GENOME BIOLOGY AND EVOLUTION (2013)
APPRIS: annotation of principal and alternative splice isoforms
Jose Manuel Rodriguez et al.
NUCLEIC ACIDS RESEARCH (2013)
ArrayExpress update-trends in database growth and links to data analysis tools
Gabriella Rustici et al.
NUCLEIC ACIDS RESEARCH (2013)
Ensembl 2013
Paul Flicek et al.
NUCLEIC ACIDS RESEARCH (2013)
Transcriptome analysis of human tissues and cell lines reveals one dominant transcript per gene
Mar Gonzalez-Porta et al.
GENOME BIOLOGY (2013)
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
Cole Trapnell et al.
NATURE PROTOCOLS (2012)
OGEE: an online gene essentiality database
Wei-Hua Chen et al.
NUCLEIC ACIDS RESEARCH (2012)
Summarizing and correcting the GC content bias in high-throughput sequencing
Yuval Benjamini et al.
NUCLEIC ACIDS RESEARCH (2012)
Detecting Individual Sites Subject to Episodic Diversifying Selection
Ben Murrell et al.
PLOS GENETICS (2012)
GC-Content Normalization for RNA-Seq Data
Davide Risso et al.
BMC BIOINFORMATICS (2011)
Age-dependent gain of alternative splice forms and biased duplication explain the relation between splicing and duplication
Julien Roux et al.
GENOME RESEARCH (2011)
The Split-Apply-Combine Strategy for Data Analysis
Hadley Wickham
JOURNAL OF STATISTICAL SOFTWARE (2011)
Factors that Contribute to Variation in Evolutionary Rate among Arabidopsis Genes
Liang Yang et al.
MOLECULAR BIOLOGY AND EVOLUTION (2011)
Evolutionary Models Accounting for Layers of Selection in Protein-Coding Genes and their Impact on the Inference of Positive Selection
Nimrod D. Rubinstein et al.
MOLECULAR BIOLOGY AND EVOLUTION (2011)
The evolution of gene expression levels in mammalian organs
David Brawand et al.
NATURE (2011)
A User's Guide to the Encyclopedia of DNA Elements (ENCODE)
Richard M. Myers et al.
PLOS BIOLOGY (2011)
Expression breadth and expression abundance behave differently in correlations with evolutionary rates
Seung Gu Park et al.
BMC EVOLUTIONARY BIOLOGY (2010)
Sex-specific and lineage-specific alternative splicing in primates
Ran Blekhman et al.
GENOME RESEARCH (2010)
Contrasts between adaptive coding and noncoding changes during human evolution
Ralph Haygood et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
A New Standard Genetic Map for the Laboratory Mouse
Allison Cox et al.
GENETICS (2009)
Circos: An information aesthetic for comparative genomics
Martin Krzywinski et al.
GENOME RESEARCH (2009)
The complex relationship of gene duplication and essentiality
Takashi Makino et al.
TRENDS IN GENETICS (2009)
GC-biased gene conversion promotes the fixation of deleterious amino acid changes in primates
Nicolas Galtier et al.
TRENDS IN GENETICS (2009)
Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution
D. Allan Drummond et al.
CELL (2008)
No effect of recombination on the efficacy of natural selection in primates
Kevin Bullaughey et al.
GENOME RESEARCH (2008)
Evolution of protein-coding genes in Drosophila
Amanda M. Larracuente et al.
TRENDS IN GENETICS (2008)
Evolutionary rate and gene expression across different brain regions
Tamir Tuller et al.
GENOME BIOLOGY (2008)
Selection for the miniaturization of highly expressed genes
Shu-Wei Li et al.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2007)
On homology searches by protein Blast and the characterization of the age of genes
M. Mar Alba et al.
BMC EVOLUTIONARY BIOLOGY (2007)
Tissue-driven hypothesis of genomic evolution and sequence-expression correlations
Xun Gu et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Impacts of gene essentiality, expression pattern, and gene compactness on the evolutionary rate of mammalian proteins
Ben-Yang Liao et al.
MOLECULAR BIOLOGY AND EVOLUTION (2006)
Gene loss and evolutionary rates following whole-genome duplication in teleost fishes
Frederic G. Brunet et al.
MOLECULAR BIOLOGY AND EVOLUTION (2006)
The quest for the universals of protein evolution
Eduardo P. C. Rocha
TRENDS IN GENETICS (2006)
Low rates of expression profile divergence in highly expressed genes and tissue-specific genes during mammalian evolution
Ben-Yang Liao et al.
MOLECULAR BIOLOGY AND EVOLUTION (2006)
An integrated view of protein evolution
C Pál et al.
NATURE REVIEWS GENETICS (2006)
Expression profiling in primates reveals a rapid evolution of human transcription factors
Y Gilad et al.
NATURE (2006)
Evolution of primate gene expression
Philipp Khaitovich et al.
NATURE REVIEWS GENETICS (2006)
The Inverse relationship between evolutionary rate and age of mammalian genes is an artifact of increased genetic distance with rate of evolution and time of divergence
E Elhaik et al.
MOLECULAR BIOLOGY AND EVOLUTION (2006)
Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level
JZ Zhang et al.
MOLECULAR BIOLOGY AND EVOLUTION (2005)
The small introns of antisense genes are better explained by selection for rapid transcription than by genomic design
JJ Chen et al.
GENETICS (2005)
Why highly expressed proteins evolve slowly
DA Drummond et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Functional genomic analysis of the rates of protein evolution
DP Wall et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
A normal approximation for the chi-square distribution
L Canal
COMPUTATIONAL STATISTICS & DATA ANALYSIS (2005)
Genome-wide midrange transcription profiles reveal expression level relationships in human tissue specification
I Yanai et al.
BIOINFORMATICS (2005)
Inverse relationship between evolutionary rate and age of mammalian genes
MM Albà et al.
MOLECULAR BIOLOGY AND EVOLUTION (2005)
Preferential duplication of conserved proteins in eukaryotic genomes
JC Davis et al.
PLOS BIOLOGY (2004)
Gene expression intensity shapes evolutionary rates of the proteins encoded by the vertebrate genome
S Subramanian et al.
GENETICS (2004)
Duplicated genes evolve slower than singletons despite the initial rate increase
IK Jordan et al.
BMC EVOLUTIONARY BIOLOGY (2004)
An analysis of determinants of amino acids substitution rates in bacterial proteins
EPC Rocha et al.
MOLECULAR BIOLOGY AND EVOLUTION (2004)
The signature of selection mediated by expression on human genes
AO Urrutia et al.
GENOME RESEARCH (2003)
Recombination explains isochores in mammalian genomes
JI Montoya-Burgos et al.
TRENDS IN GENETICS (2003)
Cytoscape: A software environment for integrated models of biomolecular interaction networks
P Shannon et al.
GENOME RESEARCH (2003)
Intra- and interspecific variation in primate gene expression patterns
W Enard et al.
SCIENCE (2002)
Determinants of substitution rates in mammalian genes: Expression pattern affects selection intensity but not mutation rate
L Duret et al.
MOLECULAR BIOLOGY AND EVOLUTION (2000)