Related references
Note: Only part of the references are listed.Linkage maps of the Atlantic salmon (Salmo salar) genome derived from RAD sequencing
Serap Gonen et al.
BMC GENOMICS (2014)
The UCSC Genome Browser database: 2014 update
Donna Karolchik et al.
NUCLEIC ACIDS RESEARCH (2014)
A well-constrained estimate for the timing of the salmonid whole genome duplication reveals major decoupling from species diversification
Daniel J. Macqueen et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2014)
The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates
Camille Berthelot et al.
NATURE COMMUNICATIONS (2014)
EST-based microsatellites for northern pike (Esox lucius) and cross-amplification across all Esox species
G. Ouellet-Cauchon et al.
CONSERVATION GENETICS RESOURCES (2014)
Non-random DNA fragmentation in next-generation sequencing
Maria S. Poptsova et al.
SCIENTIFIC REPORTS (2014)
Genomics of sablefish (Anoplopoma fimbria): expressed genes, mitochondrial phylogeny, linkage map and identification of a putative sex gene
Eric B. Rondeau et al.
BMC GENOMICS (2013)
Mapping the sex determination locus in the Atlantic halibut (Hippoglossus hippoglossus) using RAD sequencing
Christos Palaiokostas et al.
BMC GENOMICS (2013)
Pike and salmon as sister taxa: Detailed intraclade resolution and divergence time estimation of Esociformes plus Salmoniformes based on whole mitochondrial genome sequences
Matthew A. Campbell et al.
GENE (2013)
Characterization of comparative genome-derived simple sequence repeats for acanthopterygian fishes
Ryo O. Gotoh et al.
MOLECULAR ECOLOGY RESOURCES (2013)
The African coelacanth genome provides insights into tetrapod evolution
Chris T. Amemiya et al.
NATURE (2013)
Insights into the Loblolly Pine Genome: Characterization of BAC and Fosmid Sequences
Jill L. Wegrzyn et al.
PLOS ONE (2013)
Copy-number changes in evolution: rates, fitness effects and adaptive significance
Vaishali Katju et al.
Frontiers in Genetics (2013)
Bio.Phylo: A unified toolkit for processing, analyzing and visualizing phylogenetic trees in Biopython
Eric Talevich et al.
BMC BIOINFORMATICS (2012)
Profiling of gene duplication patterns of sequenced teleost genomes: evidence for rapid lineage-specific genome expansion mediated by recent tandem duplications
Jianguo Lu et al.
BMC GENOMICS (2012)
Transcriptome analysis reveals the time of the fourth round of genome duplication in common carp (Cyprinus carpio)
Jin-Tu Wang et al.
BMC GENOMICS (2012)
Universal primers for fluorescent labelling of PCR fragments-an efficient and cost-effective approach to genotyping by fluorescence
M. J. Blacket et al.
MOLECULAR ECOLOGY RESOURCES (2012)
The genomic basis of adaptive evolution in threespine sticklebacks
Felicity C. Jones et al.
NATURE (2012)
RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics
Marc Lohse et al.
NUCLEIC ACIDS RESEARCH (2012)
Transcriptome Profiling of Testis during Sexual Maturation Stages in Eriocheir sinensis Using Illumina Sequencing
Lin He et al.
PLOS ONE (2012)
Resolution of ray-finned fish phylogeny and timing of diversification
Thomas J. Near et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Assessment of population structure in Pacific Lepeophtheirus salmonis (Kroyer) using single nucleotide polymorphism and microsatellite genetic markers
Amber M. Messmer et al.
AQUACULTURE (2011)
MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects
Carson Holt et al.
BMC BIOINFORMATICS (2011)
A dense SNP-based linkage map for Atlantic salmon (Salmo salar) reveals extended chromosome homeologies and striking differences in sex-specific recombination patterns
Sigbjorn Lien et al.
BMC GENOMICS (2011)
Genome Evolution and Meiotic Maps by Massively Parallel DNA Sequencing: Spotted Gar, an Outgroup for the Teleost Genome Duplication
Angel Amores et al.
GENETICS (2011)
Genetic characterization of 18 novel microsatellite loci in northern pike (Esox lucius L.)
Jun Wang et al.
GENETICS AND MOLECULAR BIOLOGY (2011)
The genome sequence of Atlantic cod reveals a unique immune system
Bastiaan Star et al.
NATURE (2011)
Full-length transcriptome assembly from RNA-Seq data without a reference genome
Manfred G. Grabherr et al.
NATURE BIOTECHNOLOGY (2011)
Considering Transposable Element Diversification in De Novo Annotation Approaches
Timothee Flutre et al.
PLOS ONE (2011)
High-quality draft assemblies of mammalian genomes from massively parallel sequence data
Sante Gnerre et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Stacks: Building and Genotyping Loci De Novo From Short-Read Sequences
Julian M. Catchen et al.
G3-GENES GENOMES GENETICS (2011)
Search and clustering orders of magnitude faster than BLAST
Robert C. Edgar
BIOINFORMATICS (2010)
Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome
Jong S. Leong et al.
BMC GENOMICS (2010)
Phylogenetic position of the enigmatic Lepidogalaxias salamandroides with comment on the orders of lower euteleostean fishes
Jun Li et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2010)
Biopython: freely available Python tools for computational molecular biology and bioinformatics
Peter J. A. Cock et al.
BIOINFORMATICS (2009)
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
Da Wei Huang et al.
NATURE PROTOCOLS (2009)
OPINION The evolutionary significance of ancient genome duplications
Yves Van de Peer et al.
NATURE REVIEWS GENETICS (2009)
A second generation genetic map for rainbow trout (Oncorhynchus mykiss)
Caird E. Rexroad et al.
BMC GENETICS (2008)
A salmonid EST genomic study: genes, duplications, phylogeny and microarrays
Ben F. Koop et al.
BMC GENOMICS (2008)
Current and future directions for pike ecology and management: a summary and synthesis
P. Anders Nilsson et al.
HYDROBIOLOGIA (2008)
Turning a hobby into a job: How duplicated genes find new functions
Gavin C. Conant et al.
NATURE REVIEWS GENETICS (2008)
Preferential subfunctionalization of slow-evolving genes after allopolyploidization in Xenopus laevis
Marie Semon et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
A unified classification system for eukaryotic transposable elements
Thomas Wicker et al.
NATURE REVIEWS GENETICS (2007)
Bursts and horizontal evolution of DNA transposons in the speciation of pseudotetraploid salmonids
Johan G. de Boer et al.
BMC GENOMICS (2007)
The medaka draft genome and insights into vertebrate genome evolution
Masahiro Kasahara et al.
NATURE (2007)
Gene loss and evolutionary rates following whole-genome duplication in teleost fishes
Frederic G. Brunet et al.
MOLECULAR BIOLOGY AND EVOLUTION (2006)
Phylogenetic conservation of chromosome numbers in Actinopterygiian fishes
Judith E. Mank et al.
GENETICA (2006)
The gain and loss of genes during 600 million years of vertebrate evolution
Tine Blomme et al.
GENOME BIOLOGY (2006)
GMAP: a genomic mapping and alignment program for mRNA and EST sequences
TD Wu et al.
BIOINFORMATICS (2005)
Interchromosomal duplication of major histocompatibility complex class I regions in rainbow trout (Oncorhynchus mykiss), a species with a presumably recent tetraploid ancestry
T Shiina et al.
IMMUNOGENETICS (2005)
Repbase update, a database of eukaryotic repetitive elements
J Jurka et al.
CYTOGENETIC AND GENOME RESEARCH (2005)
MUSCLE: multiple sequence alignment with high accuracy and high throughput
RC Edgar
NUCLEIC ACIDS RESEARCH (2004)
Major events in the genome evolution of vertebrates: Paranome age and size differ considerably between ray-finned fishes and land vertebrates
K Vandepoele et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
Genome-size evolution in fishes
DC Hardie et al.
CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES (2004)
MUSCLE: a multiple sequence alignment method with reduced time and space complexity
RC Edgar
BMC BIOINFORMATICS (2004)
Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype
O Jaillon et al.
NATURE (2004)
Fugu genome analysis provides evidence for a whole-genome duplication early during the evolution of ray-finned fishes
A Christoffels et al.
MOLECULAR BIOLOGY AND EVOLUTION (2004)
Gene prediction with a hidden Markov model and a new intron submodel
Mario Stanke et al.
BIOINFORMATICS (2003)
Five new microsatellite markers for Northern pike (Esox lucius)
S Launey et al.
MOLECULAR ECOLOGY NOTES (2003)
The nucleotypic effects of cellular DNA content in cartilaginous and ray-finned fishes
DC Hardie et al.
GENOME (2003)
Genome duplication, a trait shared by 22,000 species of ray-finned fish
JS Taylor et al.
GENOME RESEARCH (2003)
Status and opportunities for genomics research with rainbow trout
GH Thorgaard et al.
COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY B-BIOCHEMISTRY & MOLECULAR BIOLOGY (2002)
Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes
S Aparicio et al.
SCIENCE (2002)
The human genome browser at UCSC
WJ Kent et al.
GENOME RESEARCH (2002)
MapChart: Software for the graphical presentation of linkage maps and QTLs
RE Voorrips
JOURNAL OF HEREDITY (2002)
Antifreeze proteins of teleost fishes
GL Fletcher et al.
ANNUAL REVIEW OF PHYSIOLOGY (2001)
The evolutionary fate and consequences of duplicate genes
M Lynch et al.
SCIENCE (2000)
T-Coffee: A novel method for fast and accurate multiple sequence alignment
C Notredame et al.
JOURNAL OF MOLECULAR BIOLOGY (2000)
Share Paper
