Related references
Note: Only part of the references are listed.Chromatin Accessibility Data Sets Show Bias Due to Sequence Specificity of the DNase I Enzyme
Hashem Koohy et al.
PLOS ONE (2013)
BEDOPS: high-performance genomic feature operations
Shane Neph et al.
BIOINFORMATICS (2012)
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
Stephen G. Landt et al.
GENOME RESEARCH (2012)
DNase I sensitivity QTLs are a major determinant of human expression variation
Jacob F. Degner et al.
NATURE (2012)
The accessible chromatin landscape of the human genome
Robert E. Thurman et al.
NATURE (2012)
Technical considerations for functional sequencing assays
Weihua Zeng et al.
NATURE IMMUNOLOGY (2012)
Correlation Between DNase I Hypersensitive Site Distribution and Gene Expression in HeLa S3 Cells
Ya-Mei Wang et al.
PLOS ONE (2012)
Current bioinformatic approaches to identify DNase I hypersensitive sites and genomic footprints from DNase-seq data
Pedro Madrigal et al.
Frontiers in Genetics (2012)
Dalliance: interactive genome viewing on the web
Thomas A. Down et al.
BIOINFORMATICS (2011)
Rapid innovation in ChIP-seq peak-calling algorithms is outdistancing benchmarking efforts
Adam M. Szalkowski et al.
BRIEFINGS IN BIOINFORMATICS (2011)
Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity
Lingyun Song et al.
GENOME RESEARCH (2011)
A manually curated ChIP-seq benchmark demonstrates room for improvement in current peak-finder programs
Morten Beck Rye et al.
NUCLEIC ACIDS RESEARCH (2011)
ZINBA integrates local covariates with DNA-seq data to identify broad and narrow regions of enrichment, even within amplified genomic regions
Naim U. Rashid et al.
GENOME BIOLOGY (2011)
BEDTools: a flexible suite of utilities for comparing genomic features
Aaron R. Quinlan et al.
BIOINFORMATICS (2010)
A ChIP-seq defined genome-wide map of vitamin D receptor binding: Associations with disease and evolution
Sreeram V. Ramagopalan et al.
GENOME RESEARCH (2010)
A map of open chromatin in human pancreatic islets
Kyle J. Gaulton et al.
NATURE GENETICS (2010)
Computation for ChIP-seq and RNA-seq studies
Shirley Pepke et al.
NATURE METHODS (2009)
F-Seq: a feature density estimator for high-throughput sequence tags
Alan P. Boyle et al.
BIOINFORMATICS (2008)
Design and analysis of ChIP-seq experiments for DNA-binding proteins
Peter V. Kharchenko et al.
NATURE BIOTECHNOLOGY (2008)
Model-based Analysis of ChIP-Seq (MACS)
Yong Zhang et al.
GENOME BIOLOGY (2008)
Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays
Peter J. Sabo et al.
NATURE METHODS (2006)
Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing (MPSS)
GE Crawford et al.
GENOME RESEARCH (2006)
Share Paper
