Related references
Note: Only part of the references are listed.A Guide to Enterotypes across the Human Body: Meta-Analysis of Microbial Community Structures in Human Microbiome Datasets
Omry Koren et al.
PLOS COMPUTATIONAL BIOLOGY (2013)
A systematic comparison of genome-scale clustering algorithms
Jeremy J. Jay et al.
BMC BIOINFORMATICS (2012)
Identifying genomic and metabolic features that can underline early successional and opportunistic lifestyles of human gut symbionts
Catherine Lozupone et al.
GENOME RESEARCH (2012)
Role of the microbiota in inflammatory bowel diseases
Nabeetha A. Nagalingam et al.
INFLAMMATORY BOWEL DISEASES (2012)
Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
J. Gregory Caporaso et al.
ISME JOURNAL (2012)
Structure, function and diversity of the healthy human microbiome
Curtis Huttenhower et al.
NATURE (2012)
Inflammatory Bowel Diseases Phenotype, C. difficile and NOD2 Genotype Are Associated with Shifts in Human Ileum Associated Microbial Composition
Ellen Li et al.
PLOS ONE (2012)
The Application of Ecological Theory Toward an Understanding of the Human Microbiome
Elizabeth K. Costello et al.
SCIENCE (2012)
Microbial Co-occurrence Relationships in the Human Microbiome
Karoline Faust et al.
PLOS COMPUTATIONAL BIOLOGY (2012)
Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome
Sahar Abubucker et al.
PLOS COMPUTATIONAL BIOLOGY (2012)
Inferring Correlation Networks from Genomic Survey Data
Jonathan Friedman et al.
PLOS COMPUTATIONAL BIOLOGY (2012)
Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment
Xochitl C. Morgan et al.
GENOME BIOLOGY (2012)
Metagenomics and Personalized Medicine
Herbert W. Virgin et al.
CELL (2011)
Dysbiosis of the faecal microbiota in patients with Crohn's disease and their unaffected relatives
Marie Joossens et al.
GUT (2011)
Host genes related to Paneth cells and xenobiotic metabolism are associated with shifts in human ileum-associated microbial composition
Tianyi Zhang et al.
INFLAMMATORY BOWEL DISEASES (2011)
Disease Phenotype and Genotype Are Associated with Shifts in Intestinal-associated Microbiota in Inflammatory Bowel Diseases
Daniel N. Frank et al.
INFLAMMATORY BOWEL DISEASES (2011)
Characterization of Escherichia coli Isolated from Gut Biopsies of Newly Diagnosed Patients with Inflammatory Bowel Disease
Shadi Sepehri et al.
INFLAMMATORY BOWEL DISEASES (2011)
Co-occurrence patterns for abundant marine archaeal and bacterial lineages in the deep chlorophyll maximum of coastal California
J. Michael Beman et al.
ISME JOURNAL (2011)
Loss of intestinal core 1-derived O-glycans causes spontaneous colitis in mice
Jianxin Fu et al.
JOURNAL OF CLINICAL INVESTIGATION (2011)
Transcriptomic analysis of autistic brain reveals convergent molecular pathology
Irina Voineagu et al.
NATURE (2011)
Bifidobacteria can protect from enteropathogenic infection through production of acetate
Shinji Fukuda et al.
NATURE (2011)
Intestinal homeostasis and its breakdown in inflammatory bowel disease
Kevin J. Maloy et al.
NATURE (2011)
Ecology drives a global network of gene exchange connecting the human microbiome
Chris S. Smillie et al.
NATURE (2011)
Genetics and pathogenesis of inflammatory bowel disease
Bernard Khor et al.
NATURE (2011)
Enterotypes of the human gut microbiome
Manimozhiyan Arumugam et al.
NATURE (2011)
Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47 (vol 43, pg 246, 2011)
Carl A. Anderson et al.
NATURE GENETICS (2011)
Network medicine: a network-based approach to human disease
Albert-Laszlo Barabasi et al.
NATURE REVIEWS GENETICS (2011)
A Metaproteomic Approach to Study Human-Microbial Ecosystems at the Mucosal Luminal Interface
Xiaoxiao Li et al.
PLOS ONE (2011)
Colonic mucosa-associated microbiota is influenced by an interaction of Crohn disease and FUT2 (Secretor) genotype
Philipp Rausch et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Investigating the biological and clinical significance of human dysbioses
Daniel N. Frank et al.
TRENDS IN MICROBIOLOGY (2011)
Is My Network Module Preserved and Reproducible?
Peter Langfelder et al.
PLOS COMPUTATIONAL BIOLOGY (2011)
Microbial eukaryotes in the human microbiome: ecology, evolution, and future directions
Laura Wegener Parfrey et al.
FRONTIERS IN MICROBIOLOGY (2011)
Moving pictures of the human microbiome
J. Gregory Caporaso et al.
GENOME BIOLOGY (2011)
Search and clustering orders of magnitude faster than BLAST
Robert C. Edgar
BIOINFORMATICS (2010)
Recent advances in clustering methods for protein interaction networks
Jianxin Wang et al.
BMC GENOMICS (2010)
A Pyrosequencing Study in Twins Shows That Gastrointestinal Microbial Profiles Vary With Inflammatory Bowel Disease Phenotypes
Ben P. Willing et al.
GASTROENTEROLOGY (2010)
A global network of coexisting microbes from environmental and whole-genome sequence data
Samuel Chaffron et al.
GENOME RESEARCH (2010)
Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci
Andre Franke et al.
NATURE GENETICS (2010)
QIIME allows analysis of high-throughput community sequencing data
J. Gregory Caporaso et al.
NATURE METHODS (2010)
From Structure to Function: the Ecology of Host-Associated Microbial Communities
Courtney J. Robinson et al.
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2010)
Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors
Andrew K. Benson et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Direct Exchange of Electrons Within Aggregates of an Evolved Syntrophic Coculture of Anaerobic Bacteria
Zarath M. Summers et al.
SCIENCE (2010)
Papers on normalization, variable selection, classification or clustering of microarray data
David M. Rocke et al.
BIOINFORMATICS (2009)
Mouse models of intestinal inflammation as tools to understand the pathogenesis of inflammatory bowel disease
Holm H. Uhlig et al.
EUROPEAN JOURNAL OF IMMUNOLOGY (2009)
A core gut microbiome in obese and lean twins
Peter J. Turnbaugh et al.
NATURE (2009)
Bacterial Community Variation in Human Body Habitats Across Space and Time
Elizabeth K. Costello et al.
SCIENCE (2009)
Computational cluster validation for microarray data analysis: experimental assessment of Clest, Consensus Clustering, Figure of Merit, Gap Statistics and Model Explorer
Raffaele Giancarlo et al.
BMC BIOINFORMATICS (2008)
WGCNA: an R package for weighted correlation network analysis
Peter Langfelder et al.
BMC BIOINFORMATICS (2008)
Metagenomic approaches for defining the pathogenesis of inflammatory bowel diseases
Daniel A. Peterson et al.
CELL HOST & MICROBE (2008)
War and Peace at the Intestinal Epithelial Surface: An Integrated View of Bacterial Commensalism Versus Bacterial Pathogenicity
&NA;
JOURNAL OF PEDIATRIC GASTROENTEROLOGY AND NUTRITION (2008)
clValid: An R package for cluster validation
Guy Brock et al.
JOURNAL OF STATISTICAL SOFTWARE (2008)
Systems microbiology - Timeline - Molecular eco-systems biology: towards an understanding of community function
Jeroen Raes et al.
NATURE REVIEWS MICROBIOLOGY (2008)
Network relationships of bacteria in a stable mixed culture
Souichiro Kato et al.
MICROBIAL ECOLOGY (2008)
Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients
Harry Sokol et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Effects of the gut microbiota on host adiposity are modulated by the short-chain fatty-acid binding G protein-coupled receptor, Gpr41
Buck S. Samuel et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Geometric Interpretation of Gene Coexpression Network Analysis
Steve Horvath et al.
PLOS COMPUTATIONAL BIOLOGY (2008)
Defining clusters from a hierarchical cluster tree: the Dynamic Tree Cut package for R
Peter Langfelder et al.
BIOINFORMATICS (2008)
Characterization of baseline intestinal mucosal indices of injury and inflammation in men for use in rectal microbicide trials (HIV prevention trials network-056)
Ian McGowan et al.
JAIDS-JOURNAL OF ACQUIRED IMMUNE DEFICIENCY SYNDROMES (2007)
An ecological and evolutionary perspective on human-microbe mutualism and disease
Les Dethlefsen et al.
NATURE (2007)
Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases
Daniel N. Frank et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Are clusters found in one dataset present in another dataset?
Amy V. Kapp et al.
BIOSTATISTICS (2007)
Inerences between tissue-associated intestinal microfloras of patients with Crohn's disease and ulcerative colitis
Uri Gophna et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2006)
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
T. Z. DeSantis et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2006)
Global landscape of protein complexes in the yeast Saccharomyces cerevisiae
NJ Krogan et al.
NATURE (2006)
Colonic health: Fermentation and short chain fatty acids
JMW Wong et al.
JOURNAL OF CLINICAL GASTROENTEROLOGY (2006)
Reduced diversity of faecal microbiota in Crohn's disease revealed by a metagenomic approach
C Manichanh et al.
GUT (2006)
Computational cluster validation in post-genomic data analysis
J Handl et al.
BIOINFORMATICS (2005)
Experimental models of inflammatory bowel disease reveal innate, adaptive, and regulatory mechanisms of host dialogue with the microbiota
CO Elson et al.
IMMUNOLOGICAL REVIEWS (2005)
Reproducible clusters from microarray research: Whither?
NR Garge et al.
BMC BIOINFORMATICS (2005)
Cluster stability scores for microarray data in cancer studies
M Smolkin et al.
BMC BIOINFORMATICS (2003)
Enterococcus faecalis induces inflammatory bowel disease in interleukin-10 knockout mice
E Balish et al.
AMERICAN JOURNAL OF PATHOLOGY (2002)
Diagnosis of multiple cancer types by shrunken centroids of gene expression
R Tibshirani et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
Share Paper
