Related references
Note: Only part of the references are listed.Transcriptome analysis based on next-generation sequencing of non-model plants producing specialized metabolites of biotechnological interest
Mei Xiao et al.
JOURNAL OF BIOTECHNOLOGY (2013)
Regulation of cambial activity in relation to environmental conditions: understanding the role of temperature in wood formation of trees
Shahanara Begum et al.
PHYSIOLOGIA PLANTARUM (2013)
Transcriptional Analysis Provides New Insights into Cold- and Dehydration-Tolerance Signaling Pathways and on Regulation of Stem Cell Activity in the Vascular Cambium of Poplar
Jia Zheng et al.
PLANT MOLECULAR BIOLOGY REPORTER (2013)
APPLICATIONS OF NEXT-GENERATION SEQUENCING IN PLANT BIOLOGY
Ashley N. Egan et al.
AMERICAN JOURNAL OF BOTANY (2012)
De novo assembly and characterization of bark transcriptome using Illumina sequencing and development of EST-SSR markers in rubber tree (Hevea brasiliensis Muell. Arg.)
Dejun Li et al.
BMC GENOMICS (2012)
The invention of WUS-like stem cell-promoting functions in plants predates leptosporangiate ferns
Judith Nardmann et al.
PLANT MOLECULAR BIOLOGY (2012)
Towards decoding the conifer giga-genome
John Mackay et al.
PLANT MOLECULAR BIOLOGY (2012)
Identification of Candidate Genes Underlying an Iron Efficiency Quantitative Trait Locus in Soybean
Gregory A. Peiffer et al.
PLANT PHYSIOLOGY (2012)
Selection of Reference Genes for Quantitative Gene Expression Studies in Platycladus orientalis (Cupressaceae) Using Real-Time PCR
Ermei Chang et al.
PLOS ONE (2012)
The Translation Elongation Factor eEF-1Bβ1 Is Involved in Cell Wall Biosynthesis and Plant Development in Arabidopsis thaliana
Zakir Hossain et al.
PLOS ONE (2012)
NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data
Ravi K. Patel et al.
PLOS ONE (2012)
The First Illumina-Based De Novo Transcriptome Sequencing and Analysis of Safflower Flowers
Huang Lulin et al.
PLOS ONE (2012)
Transcriptome Analysis of the Chinese White Wax Scale Ericerus pela with Focus on Genes Involved in Wax Biosynthesis
Pu Yang et al.
PLOS ONE (2012)
De Novo Sequencing and Characterization of the Floral Transcriptome of Dendrocalamus latiflorus (Poaceae: Bambusoideae)
Xue-Mei Zhang et al.
PLOS ONE (2012)
Comparing the use of leaf and cambium tissue in a single genetic study of tropical trees
Sharon E. Zytynska et al.
TREE GENETICS & GENOMES (2012)
Reference gene selection for quantitative real-time polymerase chain reaction in Populus
Meng Xu et al.
ANALYTICAL BIOCHEMISTRY (2011)
Cambial activity related to tree size in a mature silver-fir plantation
Cyrille B. K. Rathgeber et al.
ANNALS OF BOTANY (2011)
Identification of lignin genes and regulatory sequences involved in secondary cell wall formation in Acacia auriculiformis and Acacia mangium via de novo transcriptome sequencing
Melissa M. L. Wong et al.
BMC GENOMICS (2011)
Transcriptome sequencing of lentil based on second-generation technology permits large-scale unigene assembly and SSR marker discovery
Sukhjiwan Kaur et al.
BMC GENOMICS (2011)
Deep sequencing of the Camellia sinensis transcriptome revealed candidate genes for major metabolic pathways of tea-specific compounds
Cheng-Ying Shi et al.
BMC GENOMICS (2011)
Signaling and gene regulatory programs in plant vascular stem cells
Jing Zhou et al.
GENESIS (2011)
Transcriptome profiling and digital gene expression by deep-sequencing in normal/regenerative tissues of planarian Dugesia japonica
Yun-Fei Qin et al.
GENOMICS (2011)
Transcript Accumulation Dynamics of Phenylpropanoid Pathway Genes in the Maturing Xylem and Phloem of Picea abies during Latewood Formation
Giovanni Emiliani et al.
JOURNAL OF INTEGRATIVE PLANT BIOLOGY (2011)
MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods
Koichiro Tamura et al.
MOLECULAR BIOLOGY AND EVOLUTION (2011)
Overexpression of two cambium-abundant Chinese fir (Cunninghamia lanceolata) α-expansin genes ClEXPA1 and ClEXPA2 affect growth and development in transgenic tobacco and increase the amount of cellulose in stem cell walls
Guifeng Wang et al.
PLANT BIOTECHNOLOGY JOURNAL (2011)
WOX4 Imparts Auxin Responsiveness to Cambium Cells in Arabidopsis
Stefanie Suer et al.
PLANT CELL (2011)
The Populus Class III HD ZIP, popREVOLUTA, Influences Cambium Initiation and Patterning of Woody Stems
Marcel Robischon et al.
PLANT PHYSIOLOGY (2011)
A White Spruce Gene Catalog for Conifer Genome Analyses
Philippe Rigault et al.
PLANT PHYSIOLOGY (2011)
The Populus Class III HD ZIP Transcription Factor POPCORONA Affects Cell Differentiation during Secondary Growth of Woody Stems
Juan Du et al.
PLOS ONE (2011)
Selection and Validation of Reference Genes for Quantitative Real-Time PCR in Buckwheat (Fagopyrum esculentum) Based on Transcriptome Sequence Data
Natalia V. Demidenko et al.
PLOS ONE (2011)
High-throughput DNA sequencing - concepts and limitations
Martin Kircher et al.
BIOESSAYS (2010)
De novo assembled expressed gene catalog of a fast-growing Eucalyptus tree produced by Illumina mRNA-Seq
Eshchar Mizrachi et al.
BMC GENOMICS (2010)
De novo assembly and characterization of root transcriptome using Illumina paired-end sequencing and development of cSSR markers in sweetpotato (Ipomoea batatas)
Zhangying Wang et al.
BMC GENOMICS (2010)
Laser microdissection of conifer stem tissues: Isolation and analysis of high quality RNA, terpene synthase enzyme activity and terpenoid metabolites from resin ducts and cambial zone tissue of white spruce (Picea glauca)
Eric Abbott et al.
BMC PLANT BIOLOGY (2010)
Interplay of auxin, KANADI and Class III HD-ZIP transcription factors in vascular tissue formation
Michael Ilegems et al.
DEVELOPMENT (2010)
The PXY-CLE41 receptor ligand pair defines a multifunctional pathway that controls the rate and orientation of vascular cell division
J. Peter Etchells et al.
DEVELOPMENT (2010)
De novo assembly of human genomes with massively parallel short read sequencing
Ruiqiang Li et al.
GENOME RESEARCH (2010)
Assembly algorithms for next-generation sequencing data
Jason R. Miller et al.
GENOMICS (2010)
Proteome profiling of early seed development in Cunninghamia lanceolata (Lamb.) Hook
Jisen Shi et al.
JOURNAL OF EXPERIMENTAL BOTANY (2010)
Genome-Wide Analysis of WOX Gene Family in Rice, Sorghum, Maize, Arabidopsis and Poplar
Xin Zhang et al.
JOURNAL OF INTEGRATIVE PLANT BIOLOGY (2010)
APPLICATIONS OF NEXT-GENERATION SEQUENCING Sequencing technologies - the next generation
Michael L. Metzker
NATURE REVIEWS GENETICS (2010)
Comparative expression pattern analysis of WUSCHEL-related homeobox 2 (WOX2) and WOX8/9 in developing seeds and somatic embryos of the gymnosperm Picea abies
Joakim Palovaara et al.
NEW PHYTOLOGIST (2010)
Transcriptome changes in the cambial region of poplar (Populus alba L.) in response to water deficit
M. Berta et al.
PLANT BIOLOGY (2010)
TDIF Peptide Signaling Regulates Vascular Stem Cell Proliferation via the WOX4 Homeobox Gene in Arabidopsis
Yuki Hirakawa et al.
PLANT CELL (2010)
Isolation and Characterization of Expressed Sequence Tags (ESTs) from Cambium Tissue of Birch (Betula platyphylla Suk)
Chao Wang et al.
PLANT MOLECULAR BIOLOGY REPORTER (2010)
WOX4 Promotes Procambial Development
Jiabing Ji et al.
PLANT PHYSIOLOGY (2010)
High throughput DNA sequencing: The new sequencing revolution
Michel Delseny et al.
PLANT SCIENCE (2010)
High-Throughput SuperSAGE for Digital Gene Expression Analysis of Multiple Samples Using Next Generation Sequencing
Hideo Matsumura et al.
PLOS ONE (2010)
Reference gene selection for quantitative real-time PCR normalization in tomato subjected to nitrogen, cold, and light stress
Trond Lovdal et al.
ANALYTICAL BIOCHEMISTRY (2009)
Discrete Shoot and Root Stem Cell-Promoting WUS/WOX5 Functions Are an Evolutionary Innovation of Angiosperms
Judith Nardmann et al.
MOLECULAR BIOLOGY AND EVOLUTION (2009)
Differential Recruitment of WOX Transcription Factors for Lateral Development and Organ Fusion in Petunia and Arabidopsis
Michiel Vandenbussche et al.
PLANT CELL (2009)
Mapping and quantifying mammalian transcriptomes by RNA-Seq
Ali Mortazavi et al.
NATURE METHODS (2008)
Conifer WOX-related homeodomain transcription factors, developmental consideration and expression dynamic of WOX2 during Picea abies somatic embryogenesis
Joakim Palovaara et al.
PLANT MOLECULAR BIOLOGY (2008)
Non-cell-autonomous control of vascular stem cell fate by a CLE peptide/receptor system
Yuki Hirakawa et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
SAGE transcript profiling of the juvenile cambial region of Eucalyptus grandis
Mayra Costa Da Cruz Gallo De Carvalho et al.
TREE PHYSIOLOGY (2008)
Identification and analysis of differentially expressed genes in differentiating xylem of Chinese fir (Cunninghamia lanceolata) by suppression subtractive hybridization
Guifeng Wang et al.
GENOME (2007)
Clustal W and clustal X version 2.0
M. A. Larkin et al.
BIOINFORMATICS (2007)
Proteomic analysis of the cambial region in juvenile Eucalyptus grandis at three ages
Paola Alejandra Fiorani Celedon et al.
PROTEOMICS (2007)
Conserved factors regulate signalling in Arabidopsis thaliana shoot and root stem cell organizers
Ananda K. Sarkar et al.
NATURE (2007)
Overexpression of miR165 affects apical meristem formation, organ polarity establishment and vascular development in Arabidopsis
Gong-Ke Zhou et al.
PLANT AND CELL PHYSIOLOGY (2007)
The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
G. A. Tuskan et al.
SCIENCE (2006)
Dodeca-CLE peptides as suppressors of plant stem cell differentiation
Yasuko Ito et al.
SCIENCE (2006)
WEGO: a web tool for plotting GO annotations
Jia Ye et al.
NUCLEIC ACIDS RESEARCH (2006)
Validation of housekeeping genes as internal control for studying gene expression in rice by quantitative real-time PCR
Mukesh Jain et al.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2006)
Control of leaf vascular patterning by polar auxin transport
E Scarpella et al.
GENES & DEVELOPMENT (2006)
Temporal changes in the inequality of early growth of Cunninghamia lanceolata (Lamb.) hook.:: A novel application of the gini coefficient and lorenz asymmetry
Z Ma et al.
GENETICA (2006)
Blast2GO:: a universal tool for annotation, visualization and analysis in functional genomics research
A Conesa et al.
BIOINFORMATICS (2005)
Class III homeodomain-leucine zipper gene family members have overlapping, antagonistic, and distinct roles in Arabidopsis development
MJ Prigge et al.
PLANT CELL (2005)
Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper - Excel-based tool using pair-wise correlations
MW Pfaffl et al.
BIOTECHNOLOGY LETTERS (2004)
Expression dynamics of WOX genes mark cell fate decisions during early embryonic patterning in Arabidopsis thaliana
A Haecker et al.
DEVELOPMENT (2004)
A high-resolution transcript profile across the wood-forming meristem of poplar identifies potential regulators of cambial stem cell identity
J Schrader et al.
PLANT CELL (2004)
Normalization of real-time quantitative reverse transcription-PCR data: A model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets
CL Andersen et al.
CANCER RESEARCH (2004)
Prospects for inferring very large phylogenies by using the neighbor-joining method
K Tamura et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
Asymmetric leaf development and blade expansion in Arabidopsis are mediated by KANADI and YABBY activities
Y Eshed et al.
DEVELOPMENT (2004)
Cambial meristem dormancy in trees involves extensive remodelling of the transcriptome
J Schrader et al.
PLANT JOURNAL (2004)
HD-Zip III homeobox genes that include a novel member, ZeHB-13 (Zinnia)/ATHB-15 (Arabidopsis), are involved in procambium and xylem cell differentiation
K Ohashi-Ito et al.
PLANT AND CELL PHYSIOLOGY (2003)
Secondary xylem development in Arabidopsis:: a model for wood formation
N Chaffey et al.
PHYSIOLOGIA PLANTARUM (2002)
Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
Jo Vandesompele et al.
GENOME BIOLOGY (2002)
Analysis of relative gene expression data using real-time quantitative PCR and the 2-ΔΔCT method
KJ Livak et al.
METHODS (2001)
Intrinsic regulation of cambial growth
RA Savidge
JOURNAL OF PLANT GROWTH REGULATION (2001)
Unravelling cell wall formation in the woody dicot stem
EJ Mellerowicz et al.
PLANT MOLECULAR BIOLOGY (2001)
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
S Kaul et al.
NATURE (2000)
Radial distribution pattern of pectin methylesterases across the cambial region of hybrid aspen at activity and dormancy
F Micheli et al.
PLANT PHYSIOLOGY (2000)