Related references
Note: Only part of the references are listed.Metagenomics and metatranscriptomics: Windows on CF-associated viral and microbial communities
Yan Wei Lim et al.
JOURNAL OF CYSTIC FIBROSIS (2013)
Case Studies of the Spatial Heterogeneity of DNA Viruses in the Cystic Fibrosis Lung
Dana Willner et al.
AMERICAN JOURNAL OF RESPIRATORY CELL AND MOLECULAR BIOLOGY (2012)
De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities
Priya Narasingarao et al.
ISME JOURNAL (2012)
Spatial distribution of microbial communities in the cystic fibrosis lung
Dana Willner et al.
ISME JOURNAL (2012)
The Adult Cystic Fibrosis Airway Microbiota Is Stable over Time and Infection Type, and Highly Resilient to Antibiotic Treatment of Exacerbations
Anthony A. Fodor et al.
PLOS ONE (2012)
An rhs gene of Pseudomonas aeruginosa encodes a virulence protein that activates the inflammasome
Vanderlene L. Kung et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Direct sampling of cystic fibrosis lungs indicates that DNA-based analyses of upper-airway specimens can misrepresent lung microbiota
Amanda F. Goddard et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Untangling Genomes from Metagenomes: Revealing an Uncultured Class of Marine Euryarchaeota
Vaughn Iverson et al.
SCIENCE (2012)
Quality control and preprocessing of metagenomic datasets
Robert Schmieder et al.
BIOINFORMATICS (2011)
Spontaneous and evolutionary changes in the antibiotic resistance of Burkholderia cenocepacia observed by global gene expression analysis
Andrea Sass et al.
BMC GENOMICS (2011)
Phylogenetic and metabolic diversity of bacteria associated with cystic fibrosis
Adam M. Guss et al.
ISME JOURNAL (2011)
Partitioning core and satellite taxa from within cystic fibrosis lung bacterial communities
Christopher J. van der Gast et al.
ISME JOURNAL (2011)
DMS3-42: the Secret to CRISPR-Dependent Biofilm Inhibition in Pseudomonas aeruginosa
Kelli L. Palmer et al.
JOURNAL OF BACTERIOLOGY (2011)
Phenazine-1-Carboxylic Acid Promotes Bacterial Biofilm Development via Ferrous Iron Acquisition
Yun Wang et al.
JOURNAL OF BACTERIOLOGY (2011)
Lactate in cystic fibrosis sputum
Tobias Bensel et al.
JOURNAL OF CYSTIC FIBROSIS (2011)
Parallel bacterial evolution within multiple patients identifies candidate pathogenicity genes
Tami D. Lieberman et al.
NATURE GENETICS (2011)
Fast Identification and Removal of Sequence Contamination from Genomic and Metagenomic Datasets
Robert Schmieder et al.
PLOS ONE (2011)
Metagenomic detection of phage-encoded platelet-binding factors in the human oral cavity
Dana Willner et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Identification of Functional Toxin/Immunity Genes Linked to Contact-Dependent Growth Inhibition (CDI) and Rearrangement Hotspot (Rhs) Systems
Stephen J. Poole et al.
PLOS GENETICS (2011)
Identifying Active Phage Lysins through Functional Viral Metagenomics
Jonathan E. Schmitz et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2010)
Oral Bacteria as Potential Probiotics for the Pharyngeal Mucosa
Simone Guglielmetti et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2010)
The Changing Microbial Epidemiology in Cystic Fibrosis
John J. LiPuma
CLINICAL MICROBIOLOGY REVIEWS (2010)
Adaptation of Staphylococcus aureus to the cystic fibrosis lung
Christiane Goerke et al.
INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY (2010)
Viruses in the faecal microbiota of monozygotic twins and their mothers
Alejandro Reyes et al.
NATURE (2010)
Airway Microbiota and Pathogen Abundance in Age-Stratified Cystic Fibrosis Patients
Michael J. Cox et al.
PLOS ONE (2010)
Prophage Spontaneous Activation Promotes DNA Release Enhancing Biofilm Formation in Streptococcus pneumoniae
Margarida Carrolo et al.
PLOS ONE (2010)
Metagenomic analysis of respiratory tract viral communities in cystic fibrosis and non-cystic fibrosis individuals
Dana Willner et al.
VIRULENCE (2010)
Nutrient Availability as a Mechanism for Selection of Antibiotic Tolerant Pseudomonas aeruginosa within the CF Airway
Lucas R. Hoffman et al.
PLOS PATHOGENS (2010)
Respiratory disease and the role of oral bacteria
Isaac S. Gomes-Filho et al.
Journal of Oral Microbiology (2010)
Proximal Small Intestinal Microbiota and Identification of Rod-Shaped Bacteria Associated With Childhood Celiac Disease
Gangwei Ou et al.
AMERICAN JOURNAL OF GASTROENTEROLOGY (2009)
Evolutionary diversification of an ancient gene family (rhs) through C-terminal displacement
Andrew P. Jackson et al.
BMC GENOMICS (2009)
Diversity and site-specificity of the oral microflora in the elderly
D. Preza et al.
EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES (2009)
Metagenomic Analysis of Respiratory Tract DNA Viral Communities in Cystic Fibrosis and Non-Cystic Fibrosis Individuals
Dana Willner et al.
PLOS ONE (2009)
Detection of anaerobic bacteria in high numbers in sputum from patients with cystic fibrosis
Michael M. Tunney et al.
AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE (2008)
The RAST server: Rapid annotations using subsystems technology
Ramy K. Aziz et al.
BMC GENOMICS (2008)
PCR-DGGE assessment of the bacterial diversity of breast milk in women with lactational infectious mastitis
Susana Delgado et al.
BMC INFECTIOUS DISEASES (2008)
Molecular Detection of Multiple Emerging Pathogens in Sputa from Cystic Fibrosis Patients
Fadi Bittar et al.
PLOS ONE (2008)
Assessment of the bacterial diversity of human colostrum and screening of staphylococcal and enterococcal populations for potential virulence factors
Esther Jimenez et al.
RESEARCH IN MICROBIOLOGY (2008)
Redox-active antibiotics control gene expression and community behavior in divergent bacteria
Lars E. P. Dietrich et al.
SCIENCE (2008)
Molecular identification of bacteria in bronchoalveolar lavage fluid from children with cystic fibrosis
J. Kirk Harris et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Pyocyanin alters redox Homeostasis and carbon flux through central metabolic pathways in Pseudomonas aeruginosa PA14
Alexa Price-Whelan et al.
JOURNAL OF BACTERIOLOGY (2007)
CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats
Ibtissem Grissa et al.
NUCLEIC ACIDS RESEARCH (2007)
Effect of host lactate on gonococci and meningococci: New concepts on the role of metabolites in pathogenicity
Harry Smith et al.
INFECTION AND IMMUNITY (2007)
A novel Exclusion mechanism for carbon resource partitioning in Aggregatibacter actinomycetemcomitans
Stacie A. Brown et al.
JOURNAL OF BACTERIOLOGY (2007)
Use of 16S rRNA gene profiling by terminal restriction fragment length polymorphism analysis to compare bacterial communities in sputum and mouthwash samples from patients with cystic fibrosis
G. B. Rogers et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2006)
Modulator of drug activity B from Escherichia coli:: Crystal structure of a prokaryotic homologue of DT-diaphorase
Melanie A. Adams et al.
JOURNAL OF MOLECULAR BIOLOGY (2006)
Use of suppression subtractive hybridization to examine the accessory genome of the Liverpool cystic fibrosis epidemic strain of Pseudomonas aeruglnosa
Catherine H. M. Smart et al.
JOURNAL OF MEDICAL MICROBIOLOGY (2006)
Comparison of bacterial diversity along the human intestinal tract by direct cloning and sequencing of 16S rRNA genes
M Wang et al.
FEMS MICROBIOLOGY ECOLOGY (2005)
Evaluation of bacterial nitrate reduction in the human oral cavity
JJ Doel et al.
EUROPEAN JOURNAL OF ORAL SCIENCES (2005)
Effect of amoxicillin use on oral microbiota in young children
D Ready et al.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2004)
Characterization of bacterial community diversity in cystic fibrosis lung infections by use of 16S ribosomal DNA terminal restriction fragment length polymorphism profiling
GB Rogers et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2004)
Versatile and open software for comparing large genomes
S Kurtz et al.
GENOME BIOLOGY (2004)
Diversity of bacterial Populations on the tongue dorsa of patients with halitosis and healthy patients
CE Kazor et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2003)
Extracellular DNA required for bacterial biofilm formation
CB Whitchurch et al.
SCIENCE (2002)
The relative roles of passive surface forces and active ion transport in the modulation of airway surface liquid volume and composition
R Tarran et al.
JOURNAL OF GENERAL PHYSIOLOGY (2001)
Type I restriction systems: Sophisticated molecular machines (a legacy of Bertani and Weigle)
NE Murray
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2000)
High frequency of hypermutable Pseudomonas aeruginosa in cystic fibrosis lung infection
A Oliver et al.
SCIENCE (2000)
Characterization of a Rothia-like organism from a mouse:: description of Rothia nasimurium sp nov and reclassification of Stomatococcus mucilaginosus as Rothia mucilaginosa comb. nov.
MD Collins et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2000)