Related references
Note: Only part of the references are listed.A novel transcriptional regulator, ClbR, controls the cellobiose- and cellulose-responsive induction of cellulase and xylanase genes regulated by two distinct signaling pathways in Aspergillus aculeatus
Emi Kunitake et al.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2013)
The challenge of enzyme cost in the production of lignocellulosic biofuels
Daniel Klein-Marcuschamer et al.
BIOTECHNOLOGY AND BIOENGINEERING (2012)
A new Zn(II)2Cys6-type transcription factor BglR regulates β-glucosidase expression in Trichoderma reesei
Mikiko Nitta et al.
FUNGAL GENETICS AND BIOLOGY (2012)
N-Glycoform Diversity of Cellobiohydrolase I from Penicillium decumbens and Synergism of Nonhydrolytic Glycoform in Cellulose Degradation
Le Gao et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2012)
InterPro in 2011: new developments in the family and domain prediction database
Sarah Hunter et al.
NUCLEIC ACIDS RESEARCH (2012)
Conserved and essential transcription factors for cellulase gene expression in ascomycete fungi
Samuel T. Coradetti et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Cellulases from Penicillium species for producing fuels from biomass
Alexander V. Gusakov et al.
BIOFUELS-UK (2012)
Cellobiose Dehydrogenase and a Copper-Dependent Polysaccharide Monooxygenase Potentiate Cellulose Degradation by Neurospora crassa
Christopher M. Phillips et al.
ACS CHEMICAL BIOLOGY (2011)
Podospora anserina Hemicellulases Potentiate the Trichoderma reesei Secretome for Saccharification of Lignocellulosic Biomass
Marie Couturier et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2011)
Purification and characterization of a novel cellobiohydrolase (PdCel6A) from Penicillium decumbens JU-A10 for bioethanol production
Le Gao et al.
BIORESOURCE TECHNOLOGY (2011)
Transcription analysis of lignocellulolytic enzymes of Penicillium decumbens 114-2 and its catabolite-repression-resistant mutant
Xiaomin Wei et al.
COMPTES RENDUS BIOLOGIES (2011)
Improvement of cellulase activity in Trichoderma reesei by heterologous expression of a beta-glucosidase gene from Penicillium decumbens
Liang Ma et al.
ENZYME AND MICROBIAL TECHNOLOGY (2011)
Enzyme-assisted extraction of flavonoids from Ginkgo biloba leaves: Improvement effect of flavonol transglycosylation catalyzed by Penicillium decumbens cellulase
Shuo Chen et al.
ENZYME AND MICROBIAL TECHNOLOGY (2011)
Comparative genomics of citric-acid-producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88
Mikael R. Andersen et al.
GENOME RESEARCH (2011)
MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods
Koichiro Tamura et al.
MOLECULAR BIOLOGY AND EVOLUTION (2011)
Comparative genomic analysis of the thermophilic biomass-degrading fungi Myceliophthora thermophila and Thielavia terrestris
Randy M. Berka et al.
NATURE BIOTECHNOLOGY (2011)
Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma
Christian P. Kubicek et al.
GENOME BIOLOGY (2011)
Development of a highly efficient gene targeting system allowing rapid genetic manipulations in Penicillium decumbens
Zhong-Hai Li et al.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2010)
Status and prospect of lignocellulosic bioethanol production in China
Xu Fang et al.
BIORESOURCE TECHNOLOGY (2010)
High concentration ethanol production from corncob residues by fed-batch strategy
Kai Liu et al.
BIORESOURCE TECHNOLOGY (2010)
From an electrophoretic mobility shift assay to isolated transcription factors: a fast genomic-proteomic approach
Astrid R. Mach-Aigner et al.
BMC GENOMICS (2010)
Isolation and characterization of a β-glucosidase from Penicillium decumbens and improving hydrolysis of corncob residue by using it as cellulase supplementation
Mei Chen et al.
ENZYME AND MICROBIAL TECHNOLOGY (2010)
SMURF: Genomic mapping of fungal secondary metabolite clusters
Nora Khaldi et al.
FUNGAL GENETICS AND BIOLOGY (2010)
Characterization of the endoglucanase and glucomannanase activities of a glycoside hydrolase family 45 protein from Penicillium decumbens 114-2
Guodong Liu et al.
JOURNAL OF GENERAL AND APPLIED MICROBIOLOGY (2010)
KEGG for representation and analysis of molecular networks involving diseases and drugs
Minoru Kanehisa et al.
NUCLEIC ACIDS RESEARCH (2010)
MEROPS: the peptidase database
Neil D. Rawlings et al.
NUCLEIC ACIDS RESEARCH (2010)
The Pfam protein families database
Robert D. Finn et al.
NUCLEIC ACIDS RESEARCH (2010)
The Universal Protein Resource (UniProt) in 2010
Rolf Apweiler et al.
NUCLEIC ACIDS RESEARCH (2010)
Microbial enzyme systems for biomass conversion: emerging paradigms
Michael E. Himmel et al.
BIOFUELS-UK (2010)
Telomere Organization in the Ligninolytic Basidiomycete Pleurotus ostreatus
Gumer Perez et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)
Lignocellulosic residues: Biodegradation and bioconversion by fungi
Carmen Sanchez
BIOTECHNOLOGY ADVANCES (2009)
Metabolic engineering strategies for the improvement of cellulase production by Hypocrea jecorina
Christian P. Kubicek et al.
BIOTECHNOLOGY FOR BIOFUELS (2009)
Genome shuffling improves production of cellulase by Penicillium decumbens JU-A10
Y. Cheng et al.
JOURNAL OF APPLIED MICROBIOLOGY (2009)
SMART 6: recent updates and new developments
Ivica Letunic et al.
NUCLEIC ACIDS RESEARCH (2009)
The Transporter Classification Database: recent advances
Milton H. Saier et al.
NUCLEIC ACIDS RESEARCH (2009)
The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics
Brandi L. Cantarel et al.
NUCLEIC ACIDS RESEARCH (2009)
SHRiMP: Accurate Mapping of Short Color-space Reads
Stephen M. Rumble et al.
PLOS COMPUTATIONAL BIOLOGY (2009)
FTFD: an informatics pipeline supporting phylogenomic analysis of fungal transcription factors
Jongsun Park et al.
BIOINFORMATICS (2008)
Using native and syntenically mapped cDNA alignments to improve de novo gene finding
Mario Stanke et al.
BIOINFORMATICS (2008)
Simultaneous saccharification and fermentation of acid-pretreated corncobs with a recombinant Saccharomyces cerevisiae expressing β-glucosidase
Yu Shen et al.
BIORESOURCE TECHNOLOGY (2008)
Comparative secretome analyses of two Trichoderma reesei RUT-C30 and CL847 hypersecretory strains
Isabelle Herpoel-Gimbert et al.
BIOTECHNOLOGY FOR BIOFUELS (2008)
The composition of basal and induced cellulase systems in Penicillium decumbens under induction or repression conditions
Xianyun Sun et al.
ENZYME AND MICROBIAL TECHNOLOGY (2008)
Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training
Vardges Ter-Hovhannisyan et al.
GENOME RESEARCH (2008)
How biotech can transform biofuels
Lee R. Lynd et al.
NATURE BIOTECHNOLOGY (2008)
Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina)
Diego Martinez et al.
NATURE BIOTECHNOLOGY (2008)
Genome sequencing and analysis of the filamentous fungus Penicillium chrysogenum
Marco A. van den Berg et al.
NATURE BIOTECHNOLOGY (2008)
The effects of wheat bran composition on the production of biomass-hydrolyzing enzymes by Penicillium decumbens
Xianyun Sun et al.
APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY (2008)
Clustal W and clustal X version 2.0
M. A. Larkin et al.
BIOINFORMATICS (2007)
Biological hydrogen production from steam-exploded straw by simultaneous saccharification and fermentation
Dongmin Li et al.
INTERNATIONAL JOURNAL OF HYDROGEN ENERGY (2007)
Characterization and three-dimensional structures of two distinct bacterial xyloglucanases from families GH5 and GH12
Tracey M. Gloster et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2007)
Optimization of enzyme complexes for lignocellulose hydrolysis
Alex Berlin et al.
BIOTECHNOLOGY AND BIOENGINEERING (2007)
Minimus: a fast, lightweight genome assembler
Daniel D. Sommer et al.
BMC BIOINFORMATICS (2007)
Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88
Herman J. Pel et al.
NATURE BIOTECHNOLOGY (2007)
Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments
Gerard Talavera et al.
SYSTEMATIC BIOLOGY (2007)
Application of enzymes in producing bleached pulp from wheat straw
Jian Zhao et al.
BIORESOURCE TECHNOLOGY (2006)
Enzymatic saccharification of wheat straw for bioethanol production by a combined cellulase xylanase and feruloyl esterase treatment
M. G. Tabka et al.
ENZYME AND MICROBIAL TECHNOLOGY (2006)
Sequencing of Aspergillus nidulans and comparative analysis with A-fumigatus and A-oryzae
JE Galagan et al.
NATURE (2005)
Transcriptional regulation of plant cell wall degradation by filamentous fungi
N Aro et al.
FEMS MICROBIOLOGY REVIEWS (2005)
OrthoMCL: Identification of ortholog groups for eukaryotic genomes
L Li et al.
GENOME RESEARCH (2003)
Phosphoregulators: Protein kinases and protein phosphatases of mouse
ARR Forrest et al.
GENOME RESEARCH (2003)
Transcriptional regulation of xyn2 in Hypocrea jecorina
E Würleitner et al.
EUKARYOTIC CELL (2003)
STRING: a database of predicted functional associations between proteins
C von Mering et al.
NUCLEIC ACIDS RESEARCH (2003)
The TIGRFAMs database of protein families
DH Haft et al.
NUCLEIC ACIDS RESEARCH (2003)
Regulation by carbon and nitrogen sources of a family of cellulases in Aspergillus nidulans
RA Lockington et al.
FUNGAL GENETICS AND BIOLOGY (2002)
Swollenin, a Trichoderma reesei protein with sequence similarity to the plant expansins, exhibits disruption activity on cellulosic materials
M Saloheimo et al.
EUROPEAN JOURNAL OF BIOCHEMISTRY (2002)
Estimating amino acid substitution models: A comparison of Dayhoff's estimator, the resolvent approach and a maximum likelihood method
T Muller et al.
MOLECULAR BIOLOGY AND EVOLUTION (2002)
TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing
HA Schmidt et al.
BIOINFORMATICS (2002)
Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure
J Gough et al.
JOURNAL OF MOLECULAR BIOLOGY (2001)
ACEII, a novel transcriptional activator involved in regulation of cellulase and xylanase genes of Trichoderma reesei
N Aro et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2001)
Ab initio gene finding in Drosophila genomic DNA
AA Salamov et al.
GENOME RESEARCH (2000)
A whole-genome assembly of Drosophila
EW Myers et al.
SCIENCE (2000)
Isolation of the ace1 gene encoding a Cys2-His2 transcription factor involved in regulation of activity of the cellulase promoter cbh1 of Trichoderma reesei
A Saloheimo et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2000)