4.6 Article

The Fast Changing Landscape of Sequencing Technologies and Their Impact on Microbial Genome Assemblies and Annotation

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

Finished bacterial genomes from shotgun sequence data

Filipe J. Ribeiro et al.

GENOME RESEARCH (2012)

Article Biochemistry & Molecular Biology

Summarizing and correcting the GC content bias in high-throughput sequencing

Yuval Benjamini et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Biochemical Research Methods

Limitations of next-generation genome sequence assembly

Can Alkan et al.

NATURE METHODS (2011)

Article Biotechnology & Applied Microbiology

Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries

Daniel Aird et al.

GENOME BIOLOGY (2011)

Article Biochemical Research Methods

Prodigal: prokaryotic gene recognition and translation initiation site identification

Doug Hyatt et al.

BMC BIOINFORMATICS (2010)

Review Biotechnology & Applied Microbiology

Assembly algorithms for next-generation sequencing data

Jason R. Miller et al.

GENOMICS (2010)

Article Biochemical Research Methods

GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes

Amrita Pati et al.

NATURE METHODS (2010)

Article Biochemical Research Methods

Genome assembly reborn: recent computational challenges

Mihai Pop

BRIEFINGS IN BIOINFORMATICS (2009)

Article Biochemical Research Methods

Parametric Complexity of Sequence Assembly: Theory and Applications to Next Generation Sequencing

Niranjan Nagarajan et al.

JOURNAL OF COMPUTATIONAL BIOLOGY (2009)

Article Multidisciplinary Sciences

Real-Time DNA Sequencing from Single Polymerase Molecules

John Eid et al.

SCIENCE (2009)

Editorial Material Multidisciplinary Sciences

Genome Project Standards in a New Era of Sequencing

P. S. G. Chain et al.

SCIENCE (2009)

Article Multidisciplinary Sciences

Genome-wide experimental determination of barriers to horizontal gene transfer

Rotem Sorek et al.

SCIENCE (2007)

Article Biochemistry & Molecular Biology

GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses

J Besemer et al.

NUCLEIC ACIDS RESEARCH (2005)

Article Biochemistry & Molecular Biology

Automated de novo identification of repeat sequence families in sequenced genomes

ZR Bao et al.

GENOME RESEARCH (2002)