4.6 Article

Whole Transcriptome RNA-Seq Analysis of Breast Cancer Recurrence Risk Using Formalin-Fixed Paraffin-Embedded Tumor Tissue

Related references

Note: Only part of the references are listed.
Article Oncology

Challenges translating breast cancer gene signatures into the clinic

Britta Weigelt et al.

NATURE REVIEWS CLINICAL ONCOLOGY (2012)

Article Biochemical Research Methods

Cytoscape 2.8: new features for data integration and network visualization

Michael E. Smoot et al.

BIOINFORMATICS (2011)

Article Multidisciplinary Sciences

lincRNAs act in the circuitry controlling pluripotency and differentiation

Mitchell Guttman et al.

NATURE (2011)

Review Biochemical Research Methods

Computational methods for transcriptome annotation and quantification using RNA-seq

Manuel Garber et al.

NATURE METHODS (2011)

Review Genetics & Heredity

RNA sequencing: advances, challenges and opportunities

Fatih Ozsolak et al.

NATURE REVIEWS GENETICS (2011)

Article Biochemistry & Molecular Biology

lncRNAdb: a reference database for long noncoding RNAs

Paulo P. Amaral et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Biochemical Research Methods

Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments

James H. Bullard et al.

BMC BIOINFORMATICS (2010)

Article Biochemistry & Molecular Biology

Characterization of the RNA content of chromatin

Tanmoy Mondal et al.

GENOME RESEARCH (2010)

Article Endocrinology & Metabolism

Molecular Classification of Thyroid Nodules Using High-Dimensionality Genomic Data

Darya Chudova et al.

JOURNAL OF CLINICAL ENDOCRINOLOGY & METABOLISM (2010)

Review Genetics & Heredity

APPLICATIONS OF NEXT-GENERATION SEQUENCING Sequencing technologies - the next generation

Michael L. Metzker

NATURE REVIEWS GENETICS (2010)

Article Biochemistry & Molecular Biology

Detection of splice junctions from paired-end RNA-seq data by SpliceMap

Kin Fai Au et al.

NUCLEIC ACIDS RESEARCH (2010)

Review Biochemistry & Molecular Biology

MicroRNAs: Target Recognition and Regulatory Functions

David P. Bartel

Review Genetics & Heredity

RNA-Seq: a revolutionary tool for transcriptomics

Zhong Wang et al.

NATURE REVIEWS GENETICS (2009)

Article Multidisciplinary Sciences

Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression

Ahmad M. Khalil et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Biotechnology & Applied Microbiology

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Ben Langmead et al.

GENOME BIOLOGY (2009)

Article Cardiac & Cardiovascular Systems

Clinical implications and longitudinal alteration of peripheral blood transcriptional signals indicative of future cardiac allograft rejection

Mandeep R. Mehra et al.

JOURNAL OF HEART AND LUNG TRANSPLANTATION (2008)

Article Biochemical Research Methods

Mapping and quantifying mammalian transcriptomes by RNA-Seq

Ali Mortazavi et al.

NATURE METHODS (2008)

Article Cardiac & Cardiovascular Systems

Transcriptional signals of T-cell and corticosteroid-sensitive genes are associated with future acute cellular rejection in cardiac allografts

Mandeep R. Mehra et al.

JOURNAL OF HEART AND LUNG TRANSPLANTATION (2007)

Article Multidisciplinary Sciences

Fewer genes, more noncoding RNA

JM Claverie

SCIENCE (2005)

Article Multidisciplinary Sciences

The functional genomics of noncoding RNA

JS Mattick

SCIENCE (2005)

Article Biochemistry & Molecular Biology

Reactome: a knowledgebase of biological pathways

G Joshi-Tope et al.

NUCLEIC ACIDS RESEARCH (2005)

Review Biochemistry & Molecular Biology

MicroRNAs: Genomics, biogenesis, mechanism, and function

DP Bartel

Article Medicine, General & Internal

A multigene assay to predict recurrence of tamoxifen-treated, node-negative breast cancer

S Paik et al.

NEW ENGLAND JOURNAL OF MEDICINE (2004)

Article Biochemistry & Molecular Biology

Cytoscape: A software environment for integrated models of biomolecular interaction networks

P Shannon et al.

GENOME RESEARCH (2003)

Article Medicine, General & Internal

A gene-expression signature as a predictor of survival in breast cancer.

MJ van de Vijver et al.

NEW ENGLAND JOURNAL OF MEDICINE (2002)

Article Multidisciplinary Sciences

Gene expression profiling predicts clinical outcome of breast cancer

LJ van't Veer et al.

NATURE (2002)

Article Statistics & Probability

A direct approach to false discovery rates

JD Storey

JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY (2002)

Article Multidisciplinary Sciences

Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications

T Sorlie et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)