4.6 Article

Design Constraints on a Synthetic Metabolism

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

Optimal regulatory strategies for metabolic pathways in Escherichia coli depending on protein costs

Frank Wessely et al.

MOLECULAR SYSTEMS BIOLOGY (2011)

Article Biotechnology & Applied Microbiology

Improved xylose and arabinose utilization by an industrial recombinant Saccharomyces cerevisiae strain using evolutionary engineering

Rosa Garcia Sanchez et al.

BIOTECHNOLOGY FOR BIOFUELS (2010)

Article Mathematical & Computational Biology

Genotype networks in metabolic reaction spaces

Areejit Samal et al.

BMC SYSTEMS BIOLOGY (2010)

Article Mathematical & Computational Biology

Optimization strategies for metabolic networks

Alexandre Domingues et al.

BMC SYSTEMS BIOLOGY (2010)

Article Mathematical & Computational Biology

OptFlux: an open-source software platform for in silico metabolic engineering

Isabel Rocha et al.

BMC SYSTEMS BIOLOGY (2010)

Article Mathematical & Computational Biology

OptORF: Optimal metabolic and regulatory perturbations for metabolic engineering of microbial strains

Joonhoon Kim et al.

BMC SYSTEMS BIOLOGY (2010)

Review Microbiology

The biomass objective function

Adam M. Feist et al.

CURRENT OPINION IN MICROBIOLOGY (2010)

Editorial Material Environmental Sciences

Synthetic Biology Environmental Health Implications of a New Field

Charles W. Schmidt

ENVIRONMENTAL HEALTH PERSPECTIVES (2010)

Article Food Science & Technology

Increased biomass production of industrial bakers' yeasts by overexpression of Hap4 gene

Rafael Duenas-Sanchez et al.

INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY (2010)

Article Biotechnology & Applied Microbiology

What is flux balance analysis?

Jeffrey D. Orth et al.

NATURE BIOTECHNOLOGY (2010)

Article Oncology

Biotechnological Production of Taxol and Related Taxoids: Current State and Prospects

O. Exposito et al.

ANTI-CANCER AGENTS IN MEDICINAL CHEMISTRY (2009)

Article Biotechnology & Applied Microbiology

Alcoholic fermentation of xylose and mixed sugars using recombinant Saccharomyces cerevisiae engineered for xylose utilization

Anjali Madhavan et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2009)

Article Mathematics

The Markov chain Monte Carlo revolution

Persi Diaconis

BULLETIN OF THE AMERICAN MATHEMATICAL SOCIETY (2009)

Article Biology

Flux balance analysis: A geometric perspective

Kieran Smallbone et al.

JOURNAL OF THEORETICAL BIOLOGY (2009)

Review Biochemistry & Molecular Biology

Applications of genome-scale metabolic reconstructions

Matthew A. Oberhardt et al.

MOLECULAR SYSTEMS BIOLOGY (2009)

Article Biochemical Research Methods

Evolutionary Plasticity and Innovations in Complex Metabolic Reaction Networks

Joao F. Matias Rodrigues et al.

PLOS COMPUTATIONAL BIOLOGY (2009)

Editorial Material Biochemistry & Molecular Biology

Defossiling fuel: How synthetic biology can transform biofuel production

David F. Savage et al.

ACS CHEMICAL BIOLOGY (2008)

Article Computer Science, Interdisciplinary Applications

A bilevel optimization algorithm to identify enzymatic capacity constraints in metabolic networks

Laurence Yang et al.

COMPUTERS & CHEMICAL ENGINEERING (2008)

Article Biology

An environmental perspective on metabolism

Thomas Handorf et al.

JOURNAL OF THEORETICAL BIOLOGY (2008)

Review Microbiology

Progress in metabolic engineering of Saccharomyces cerevisiae

Elke Nevoigt

MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2008)

Article Biochemical Research Methods

Parameter estimation using Simulated Annealing for S-system models of biochemical networks

Orland R. Gonzalez et al.

BIOINFORMATICS (2007)

Article Biochemical Research Methods

Robustness can evolve gradually in complex regulatory gene networks with varying topology

Stefano Ciliberti et al.

PLOS COMPUTATIONAL BIOLOGY (2007)

Article Biophysics

Optimization of a stochastically simulated gene network model via simulated annealing

Jonathan Tomshine et al.

BIOPHYSICAL JOURNAL (2006)

Article Biochemistry & Molecular Biology

Hap4 is not essential for activation of respiration at low specific growth rates in Saccharomyces cerevisiae

V Raghevendran et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2006)

Article Biochemical Research Methods

Evolutionary programming as a platform for in silico metabolic engineering -: art. no. 308

KR Patil et al.

BMC BIOINFORMATICS (2005)

Review Biotechnology & Applied Microbiology

Biotechnological production of amino acids and derivatives: current status and prospects

W Leuchtenberger et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2005)

Review Biotechnology & Applied Microbiology

Botryococcus braunii:: a rich source for hydrocarbons and related ether lipids

P Metzger et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2005)

Article Multidisciplinary Sciences

Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli

RA Welch et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)

Article Multidisciplinary Sciences

Analysis of optimality in natural and perturbed metabolic networks

D Segrè et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)

Article Microbiology

Genome-scale metabolic model of Helicobacter pylori 26695

CH Schilling et al.

JOURNAL OF BACTERIOLOGY (2002)

Article Biochemistry & Molecular Biology

LIGAND: database of chemical compounds and reactions in biological pathways

S Goto et al.

NUCLEIC ACIDS RESEARCH (2002)

Article Biology

Regulation of gene expression in flux balance models of metabolism

MW Covert et al.

JOURNAL OF THEORETICAL BIOLOGY (2001)

Article Biotechnology & Applied Microbiology

Robustness analysis of the Escherichia coli metabolic network

JS Edwards et al.

BIOTECHNOLOGY PROGRESS (2000)

Article Biochemistry & Molecular Biology

KEGG: Kyoto Encyclopedia of Genes and Genomes

M Kanehisa et al.

NUCLEIC ACIDS RESEARCH (2000)

Article Biochemistry & Molecular Biology

LIGAND: chemical database of enzyme reactions

S Goto et al.

NUCLEIC ACIDS RESEARCH (2000)