4.6 Article

The Natural Product Domain Seeker NaPDoS: A Phylogeny Based Bioinformatic Tool to Classify Secondary Metabolite Gene Diversity

Related references

Note: Only part of the references are listed.
Article Biotechnology & Applied Microbiology

Evolution of Secondary Metabolite Genes in Three Closely Related Marine Actinomycete Species

Kelle C. Freel et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2011)

Review Biochemistry & Molecular Biology

Genomics-inspired discovery of natural products

Jaclyn M. Winter et al.

CURRENT OPINION IN CHEMICAL BIOLOGY (2011)

Review Biochemistry & Molecular Biology

How to discover new antibiotics: harvesting the parvome

Julian Davies

CURRENT OPINION IN CHEMICAL BIOLOGY (2011)

Article Multidisciplinary Sciences

Widespread Occurrence of Secondary Lipid Biosynthesis Potential in Microbial Lineages

Christine N. Shulse et al.

PLOS ONE (2011)

Article Biotechnology & Applied Microbiology

Sequence-Based Analysis of Secondary-Metabolite Biosynthesis in Marine Actinobacteria

Erin A. Gontang et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2010)

Article Biochemical Research Methods

The Newick utilities: high-throughput phylogenetic tree processing in the Unix shell

Thomas Junier et al.

BIOINFORMATICS (2010)

Review Biochemistry & Molecular Biology

Biosynthesis of polyketides by trans-AT polyketide synthases

Joern Piel

NATURAL PRODUCT REPORTS (2010)

Article Biochemistry & Molecular Biology

The Pfam protein families database

Robert D. Finn et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Multidisciplinary Sciences

Common biosynthetic origins for polycyclic tetramate macrolactams from phylogenetically diverse bacteria

Joshua A. V. Blodgett et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Review Chemistry, Multidisciplinary

The Biosynthetic Logic of Polyketide Diversity

Christian Hertweck

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2009)

Article Chemistry, Medicinal

Function-Oriented Biosynthesis of β-Lactone Proteasome Inhibitors in Salinispora tropica

Markus Nett et al.

JOURNAL OF MEDICINAL CHEMISTRY (2009)

Review Biochemistry & Molecular Biology

Bioinformatic perspectives on NRPS/PKS megasynthases: Advances and challenges

Holger Jenke-Kodama et al.

NATURAL PRODUCT REPORTS (2009)

Editorial Material Biochemical Research Methods

Next-generation gap

John D. McPherson

NATURE METHODS (2009)

Review Biochemistry & Molecular Biology

Evolution of metabolic diversity: Insights from microbial polyketide synthases

Holger Jenke-Kodama et al.

PHYTOCHEMISTRY (2009)

Article Multidisciplinary Sciences

Biosynthesis of the salinosporamide A polyketide synthase substrate chloroethylmalonyl-coenzyme A from S-adenosyl-L-methionine

Alessandra S. Eustaquio et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Review Multidisciplinary Sciences

Drug Discovery and Natural Products: End of an Era or an Endless Frontier?

Jesse W. -H. Li et al.

SCIENCE (2009)

Article Biochemical Research Methods

Towards Prediction of Metabolic Products of Polyketide Synthases: An In Silico Analysis

Gitanjali Yadav et al.

PLOS COMPUTATIONAL BIOLOGY (2009)

Article Chemistry, Medicinal

Genome mining for novel natural product discovery

Gregory L. Challis

JOURNAL OF MEDICINAL CHEMISTRY (2008)

Article Biochemistry & Molecular Biology

Phylogeny.fr: robust phylogenetic analysis for the non-specialist

A. Dereeper et al.

NUCLEIC ACIDS RESEARCH (2008)

Article Multidisciplinary Sciences

A Computational Screen for Type I Polyketide Synthases in Metagenomics Shotgun Data

Konrad U. Foerstner et al.

PLOS ONE (2008)

Article Multidisciplinary Sciences

Evolution of polyketide synthases in bacteria

Christian P. Ridley et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Multidisciplinary Sciences

Genome sequencing reveals complex secondary metabolome in the marine actinomycete Salinispora tropica

Daniel W. Udwary et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Evolutionary Biology

Phylogenetic analysis of condensation domains in NRPS sheds light on their functional evolution

Christian Rausch et al.

BMC EVOLUTIONARY BIOLOGY (2007)

Article Biochemistry & Molecular Biology

A genomic screening approach to the structure-guided identification of drug candidates from natural sources

Andreas Hornung et al.

CHEMBIOCHEM (2007)

Article Biotechnology & Applied Microbiology

Phylogenetic diversity of gram-positive bacteria cultured from marine sediments

Erin A. Gontang et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)

Article Biotechnology & Applied Microbiology

Species-specific secondary metabolite production in marine actinomycetes of the genus Salinispora

Paul R. Jensen et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)

Review Biochemistry & Molecular Biology

The value of natural products to future pharmaceutical discovery

Dwight D. Baker et al.

NATURAL PRODUCT REPORTS (2007)

Review Plant Sciences

Natural products as sources of new drugs over the last 25 years

David J. Newman et al.

JOURNAL OF NATURAL PRODUCTS (2007)

Review Chemistry, Multidisciplinary

Assembly-line enzymology for polyketide and nonribosomal peptide antibiotics: Logic, machinery, and mechanisms

Michael A. Fischbach et al.

CHEMICAL REVIEWS (2006)

Article Multidisciplinary Sciences

A Sanger/pyrosequencing hybrid approach tor the generation of high-quality draft assemblies of marine microbial genomes

Susanne M. D. Goldberg et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Article Microbiology

Phylogenetic analysis of condensation domains in the nonribosomal peptide synthetases

N Roongsawang et al.

FEMS MICROBIOLOGY LETTERS (2005)

Review Biochemistry & Molecular Biology

Formation of novel secondary metabolites by bacterial multimodular assembly lines:: deviations from textbook biosynthetic logic

SC Wenzel et al.

CURRENT OPINION IN CHEMICAL BIOLOGY (2005)

Article Biochemistry & Molecular Biology

Discovery of a new peptide natural product by Streptomyces coelicolor genome mining

S Lautru et al.

NATURE CHEMICAL BIOLOGY (2005)

Article Biochemistry & Molecular Biology

Evolutionary implications of bacterial polyketide synthases

H Jenke-Kodama et al.

MOLECULAR BIOLOGY AND EVOLUTION (2005)

Article Biochemistry & Molecular Biology

Type I polyketide synthases may have evolved through horizontal gene transfer

A Ginolhac et al.

JOURNAL OF MOLECULAR EVOLUTION (2005)

Article Multidisciplinary Sciences

Comparative metagenomics of microbial communities

SG Tringe et al.

SCIENCE (2005)

Review Chemistry, Multidisciplinary

Molecular mechanisms underlying nonribosomal peptide synthesis: Approaches to new antibiotics

SA Sieber et al.

CHEMICAL REVIEWS (2005)

Article Biochemistry & Molecular Biology

MUSCLE: multiple sequence alignment with high accuracy and high throughput

RC Edgar

NUCLEIC ACIDS RESEARCH (2004)

Article Multidisciplinary Sciences

Polyketide biosynthesis: understanding and exploiting modularity

KJ Weissman

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES (2004)

Article Biochemistry & Molecular Biology

NRPS-PKS: a knowledge-based resource for analysis of NRPS/PKS megasynthases

MZ Ansari et al.

NUCLEIC ACIDS RESEARCH (2004)

Review Microbiology

Substrate recognition by nonribosomal peptide synthetase multi-enzymes

S Lautru et al.

MICROBIOLOGY-SGM (2004)

Review Biochemistry & Molecular Biology

Loss of co-linearity by modular polyketide synthases: a mechanism for the evolution of chemical diversity

SJ Moss et al.

NATURAL PRODUCT REPORTS (2004)

Review Microbiology

Biosynthesis of nonribosomal peptides

R Finking et al.

ANNUAL REVIEW OF MICROBIOLOGY (2004)

Article Evolutionary Biology

A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood

S Guindon et al.

SYSTEMATIC BIOLOGY (2003)

Article Biotechnology & Applied Microbiology

Complete genome sequence and comparative analysis of the industrial microorganism Streptomyces avermitilis

H Ikeda et al.

NATURE BIOTECHNOLOGY (2003)

Review Biochemistry & Molecular Biology

Polyketide biosynthesis beyond the type I, II and III polyketide synthase paradigms

B Shen

CURRENT OPINION IN CHEMICAL BIOLOGY (2003)

Article Biochemistry & Molecular Biology

Evolutionary affiliations within the superfamily of ketosynthases reflect complex pathway associations

MC Moffitt et al.

JOURNAL OF MOLECULAR EVOLUTION (2003)

Article Multidisciplinary Sciences

Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2)

SD Bentley et al.

NATURE (2002)

Article Microbiology

The tylosin-biosynthetic genes of Streptomyces fradiae

E Cundliffe et al.

ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY (2001)