4.6 Article

Calculating Ensemble Averaged Descriptions of Protein Rigidity without Sampling

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

Protein rigidity and thermophilic adaptation

Sebastian Radestock et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2011)

Article Biophysics

Allosteric Response Is both Conserved and Variable across Three CheY Orthologs

James M. Mottonen et al.

BIOPHYSICAL JOURNAL (2010)

Article Pharmacology & Pharmacy

Coarse-grained models: getting more with less

A. J. Rader

CURRENT OPINION IN PHARMACOLOGY (2010)

Article Pharmacology & Pharmacy

Ensemble-based methods for describing protein dynamics

Donald J. Jacobs

CURRENT OPINION IN PHARMACOLOGY (2010)

Article Pharmacology & Pharmacy

Reaching biological timescales with all-atom molecular dynamics simulations

Matthew C. Zwier et al.

CURRENT OPINION IN PHARMACOLOGY (2010)

Article Pharmacology & Pharmacy

Molecular dynamics simulations of protein dynamics and their relevance to drug discovery

Freddie R. Salsbury

CURRENT OPINION IN PHARMACOLOGY (2010)

Review Biochemistry & Molecular Biology

Predicting the Melting Point of Human C-Type Lysozyme Mutants

Deeptak Verma et al.

CURRENT PROTEIN & PEPTIDE SCIENCE (2010)

Article Multidisciplinary Sciences

Predicting resistance mutations using protein design algorithms

Kathleen M. Frey et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Biochemistry & Molecular Biology

Generating stereochemically acceptable protein pathways

Daniel W. Farrell et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2010)

Article Biophysics

Helix/Coil Nucleation: A Local Response to Global Demands

Oleg K. Vorov et al.

BIOPHYSICAL JOURNAL (2009)

Review Biochemical Research Methods

Constraint counting on RNA structures: Linking flexibility and function

Simone Fulle et al.

METHODS (2009)

Article Biochemistry & Molecular Biology

Unifying mechanical and thermodynamic descriptions across the thioredoxin protein family

James M. Mottonen et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2009)

Article Biochemistry & Molecular Biology

Identification of putative, stable binding regions through flexibility analysis of HIV-1 gp120

Hepan Tan et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2009)

Article Biochemistry & Molecular Biology

Comparative analysis of rigidity across protein families

S. A. Wells et al.

PHYSICAL BIOLOGY (2009)

Article Biochemistry & Molecular Biology

New insight into long-range nonadditivity within protein double-mutant cycles

Andrei Y. Istomin et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2008)

Article Biochemistry & Molecular Biology

Conserved quantitative stability/flexibility relationships (QSFR) in an orthologous RNase H pair

DR Livesay et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2006)

Article Biochemistry & Molecular Biology

Constrained geometric simulation of diffusive motion in proteins

SA Wells et al.

PHYSICAL BIOLOGY (2005)

Article Polymer Science

Folding core predictions from network models of proteins

AJ Rader et al.

POLYMER (2004)

Article Chemistry, Multidisciplinary

Sampling protein conformations and pathways

M Lei et al.

JOURNAL OF COMPUTATIONAL CHEMISTRY (2004)

Article Biochemistry & Molecular Biology

Modeling correlated main-chain motions in proteins for flexible molecular recognition

MI Zavodszky et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2004)

Article Biochemistry & Molecular Biology

A flexible approach for understanding protein stability

DR Livesay et al.

FEBS LETTERS (2004)

Article Multidisciplinary Sciences

Identification of core amino acids stabilizing rhodopsin

AJ Rader et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Article Biochemistry & Molecular Biology

Uncovering network systems within protein structures

LH Greene et al.

JOURNAL OF MOLECULAR BIOLOGY (2003)

Article Biochemical Research Methods

Identifying protein folding cores from the evolution of flexible regions during unfolding

BM Hespenheide et al.

JOURNAL OF MOLECULAR GRAPHICS & MODELLING (2002)

Article Multidisciplinary Sciences

Protein unfolding: Rigidity lost

AJ Rader et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)

Article Biochemistry & Molecular Biology

Protein flexibility predictions using graph theory

DJ Jacobs et al.

PROTEINS-STRUCTURE FUNCTION AND GENETICS (2001)