Related references
Note: Only part of the references are listed.FR-HIT, a very fast program to recruit metagenomic reads to homologous reference genomes
Beifang Niu et al.
BIOINFORMATICS (2011)
Adaptive seeds tame genomic sequence comparison
Szymon M. Kielbasa et al.
GENOME RESEARCH (2011)
A new repeat-masking method enables specific detection of homologous sequences
Martin C. Frith
NUCLEIC ACIDS RESEARCH (2011)
The UCSC Genome Browser database: update 2011
Pauline A. Fujita et al.
NUCLEIC ACIDS RESEARCH (2011)
Parameters for accurate genome alignment
Martin C. Frith et al.
BMC BIOINFORMATICS (2010)
A human gut microbial gene catalogue established by metagenomic sequencing
Junjie Qin et al.
NATURE (2010)
Molecular Poltergeists: Mitochondrial DNA Copies (numts) in Sequenced Nuclear Genomes
Einat Hazkani-Covo et al.
PLOS GENETICS (2010)
Benchmarking homology detection procedures with low complexity filters
Kristoffer Forslund et al.
BIOINFORMATICS (2009)
BLAST plus : architecture and applications
Christiam Camacho et al.
BMC BIOINFORMATICS (2009)
Sequence context-specific profiles for homology searching
A. Biegert et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Uncertainty in homology inferences: Assessing and improving genomic sequence alignment
Gerton Lunter et al.
GENOME RESEARCH (2008)
The whole alignment and nothing but the alignment: the problem of spurious alignment flanks
Martin C. Frith et al.
NUCLEIC ACIDS RESEARCH (2008)
28-way vertebrate alignment and conservation track in the UCSC Genome Browser
Webb Miller et al.
GENOME RESEARCH (2007)
UniRef: comprehensive and non-redundant UniProt reference clusters
Baris E. Suzek et al.
BIOINFORMATICS (2007)
Composition-based statistics and translated nucleotide searches:: Improving the TBLASTN module of BLAST
E. Michael Gertz et al.
BMC BIOLOGY (2006)
Protein database searches using compositionally adjusted substitution matrices
SF Altschul et al.
FEBS JOURNAL (2005)
The Gumbel pre-factor k for gapped local alignment can be estimated from simulations of global alignment
S Sheetlin et al.
NUCLEIC ACIDS RESEARCH (2005)
Human-mouse alignments with BLASTZ
S Schwartz et al.
GENOME RESEARCH (2003)
Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements
AA Schäffer et al.
NUCLEIC ACIDS RESEARCH (2001)
Share Paper
