Related references
Note: Only part of the references are listed.Three-dimensional molecular modeling with single molecule FRET
Axel T. Brunger et al.
JOURNAL OF STRUCTURAL BIOLOGY (2011)
Accurate Distance Determination of Nucleic Acids via Forster Resonance Energy Transfer: Implications of Dye Linker Length and Rigidity
Simon Sindbert et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2011)
Quantifying heterogeneity and conformational dynamics from single molecule FRET of diffusing molecules: recurrence analysis of single particles (RASP)
Armin Hoffmann et al.
PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2011)
Separating Static and Dynamic Heterogeneity in Single-Molecule FRET Experiments with Burst Variance Analysis (BVA)
Joseph P. Torella et al.
BIOPHYSICAL JOURNAL (2010)
The Effect of Dye-Dye Interactions on the Spatial Resolution of Single-Molecule FRET Measurements in Nucleic Acids
Nicolas Di Fiori et al.
BIOPHYSICAL JOURNAL (2010)
Characterizing Single-Molecule FRET Dynamics with Probability Distribution Analysis
Yusdi Santoso et al.
CHEMPHYSCHEM (2010)
On the Origin of Broadening of Single-Molecule FRET Efficiency Distributions beyond Shot Noise Limits
Stanislav Kalinin et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2010)
Free Energy Surfaces from Single-Distance Information
Philipp Schuetz et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2010)
Monitoring multiple distances within a single molecule using switchable FRET
Stephan Uphoff et al.
NATURE METHODS (2010)
Single-molecule spectroscopy of protein folding in a chaperonin cage
Hagen Hofmann et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
ACCURATE SINGLE-MOLECULE FRET STUDIES USING MULTIPARAMETER FLUORESCENCE DETECTION
Evangelos Sisamakis et al.
METHODS IN ENZYMOLOGY, VOL 475: SINGLE MOLECULE TOOLS, PT B: SUPER-RESOLUTION, PARTICLE TRACKING, MULTIPARAMETER, AND FORCE BASED METHODS (2010)
Ultrafast resonance energy transfer from a site-specifically attached fluorescent chromophore reveals the folding of the N-terminal domain of CP29
Bart Van Oort et al.
CHEMICAL PHYSICS (2009)
Theoretical Studies of Short Polyproline Systems: Recalibration of a Molecular Ruler
Elena Dolghih et al.
JOURNAL OF PHYSICAL CHEMISTRY A (2009)
Photophysics of Backbone Fluorescent DNA Modifications: Reducing Uncertainties in FRET
Suman Ranjit et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2009)
Conformational Heterogeneity of a Leucine Enkephalin Analogue in Aqueous Solution and Sodium Dodecyl Sulfate Micelles: Comparison of Time-Resolved FRET and Molecular Dynamics Simulations
Jay R. Unruh et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2009)
Decoding the Pattern of Photon Colors in Single-Molecule FRET
Irina V. Gopich et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2009)
Conformations and free energy landscapes of polyproline peptides
Mahmoud Moradi et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Probing protein-chaperone interactions with single-molecule fluorescence spectroscopy
Frank Hillger et al.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2008)
Simulation of structure, orientation, and energy transfer between AlexaFluor molecules attached to MscL
Ben Corry et al.
BIOPHYSICAL JOURNAL (2008)
Protein folding studied by single-molecule FRET
Benjamin Schuler et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2008)
Hydrophobicity effect on interactions between organic molecules in nanocages of surfactant micelle
S. L. Yefimova et al.
JOURNAL OF APPLIED SPECTROSCOPY (2008)
The Proton-translocating a Subunit of F0F1-ATP Synthase Is Allocated Asymmetrically to the Peripheral Stalk
Monika G. Dueser et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2008)
GROMACS 4: Algorithms for highly efficient, load-balanced, and scalable molecular simulation
Berk Hess et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2008)
Characterizing multiple molecular states in single-molecule multiparameter fluorescence detection by probability distribution analysis
Stanislav Kalinin et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2008)
Pitfalls and limitations in the practical use of Forster's theory of resonance energy transfer
Silvia E. Braslavsky et al.
PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES (2008)
Single-molecule FRET measures bends and kinks in DNA
Anna K. Wozniak et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Effect of flexibility and cis residues in single-molecule FRET studies of polyproline
Robert B. Best et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Single-molecule FRET with diffusion and conformational dynamics
Irina V. Gopich et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2007)
Probing polyproline structure and dynamics by photoinduced electron transfer provides evidence for deviations from a regular polyproline type II helix
Soeren Doose et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Orientational and dynamical heterogeneity of rhodamine 6G terminally attached to a DNA helix revealed by NMR and single-molecule fluorescence spectroscopy
Heike Neubauer et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2007)
Fluorescence properties and photophysics of the sulfoindocyanine Cy3 linked covalently to DNA
Matthew E. Sanborn et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2007)
Probability distribution analysis of single-molecule fluorescence anisotropy and resonance energy transfer
Stanislav Kalinin et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2007)
Canonical sampling through velocity rescaling
Giovanni Bussi et al.
JOURNAL OF CHEMICAL PHYSICS (2007)
Shot-noise limited single-molecule FRET histograms: Comparison between theory and experiments
Eyal Nir et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2006)
Determination of the orientational distribution and orientation factor for transfer between membrane-bound fluorophores using a confocal microscope
Ben Corry et al.
BIOPHYSICAL JOURNAL (2006)
Separating structural heterogeneities from stochastic variations in fluorescence resonance energy transfer distributions via photon distribution analysis
M Antonik et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2006)
Single-molecule detection and identification of multiple species by multiparameter fluorescence detection
J Widengren et al.
ANALYTICAL CHEMISTRY (2006)
GROMACS: Fast, flexible, and free
D Van der Spoel et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2005)
Detecting protein-induced folding of the U4 snRNA kink-turn by single-molecule multiparameter FRET measurements
AK Wozniak et al.
RNA (2005)
Unusual compactness of a polyproline type II structure
B Zagrovic et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Polyproline and the spectroscopic ruler revisited with single-molecule fluorescence
B Schuler et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Theory of photon statistics in single-molecule Forster resonance energy transfer
I Gopich et al.
JOURNAL OF CHEMICAL PHYSICS (2005)
FRETsg:: Biomolecular structure model building from multiple FRET experiments
GF Schröder et al.
COMPUTER PHYSICS COMMUNICATIONS (2004)
Single-molecule fluorescence resonance energy transfer reveals a dynamic equilibrium between closed and open conformations of syntaxin 1
M Margittai et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
Maximum likelihood trajectories from single molecule fluorescence resonance energy transfer experiments
GF Schröder et al.
JOURNAL OF CHEMICAL PHYSICS (2003)
Single-macromolecule fluorescence resonance energy transfer and free-energy profiles
IV Gopich et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2003)
Multiparameter single-molecule fluorescence spectroscopy reveals heterogeneity of HIV-1 reverse transcriptase:: primer/template complexes
PJ Rothwell et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
Probing the free-energy surface for protein folding with single-molecule fluorescence spectroscopy
B Schuler et al.
NATURE (2002)
Alexa and Oregon Green dyes as fluorescence anisotropy probes for measuring protein-protein and protein-nucleic acid interactions
E Rusinova et al.
ANALYTICAL BIOCHEMISTRY (2002)
Photon statistics and dynamics of fluorescence resonance energy transfer
AJ Berglund et al.
PHYSICAL REVIEW LETTERS (2002)
Single-molecule fluorescence resonance energy transfer
T Ha
METHODS (2001)