Related references
Note: Only part of the references are listed.A Common Origin: Signaling Similarities in the Regulation of the Circadian Clock and DNA Damage Responses
Yoshimi Uchida et al.
BIOLOGICAL & PHARMACEUTICAL BULLETIN (2010)
SnapShot: Nucleotide Excision Repair
Caixia Guo et al.
CELL (2010)
MULTIPLE PAR AND E4BP4 bZIP TRANSCRIPTION FACTORS IN ZEBRAFISH: DIVERSE SPATIAL AND TEMPORAL EXPRESSION PATTERNS
Zohar Ben-Moshe et al.
CHRONOBIOLOGY INTERNATIONAL (2010)
Reactive oxygen species, cellular redox systems, and apoptosis
Magdalena L. Circu et al.
FREE RADICAL BIOLOGY AND MEDICINE (2010)
Using Trawler_standalone to discover overrepresented motifs in DNA and RNA sequences derived from various experiments including chromatin immunoprecipitation
Yannick Haudry et al.
NATURE PROTOCOLS (2010)
Thyrotroph Embryonic Factor Regulates Light-Induced Transcription of Repair Genes in Zebrafish Embryonic Cells
Daria Gavriouchkina et al.
PLOS ONE (2010)
ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks
Gabriela Bindea et al.
BIOINFORMATICS (2009)
BioMart - biological queries made easy
Damian Smedley et al.
BMC GENOMICS (2009)
Common light signaling pathways controlling DNA repair and circadian clock entrainment in zebrafish
Jun Hirayama et al.
CELL CYCLE (2009)
The 2008 Pittendrigh/Aschoff Lecture: Peripheral Phase Coordination in the Mammalian Circadian Timing System
Ueli Schibler
JOURNAL OF BIOLOGICAL RHYTHMS (2009)
Glucocorticoids and the circadian clock
Thomas Dickmeis
JOURNAL OF ENDOCRINOLOGY (2009)
LitInspector: literature and signal transduction pathway mining in PubMed abstracts
Matthias Frisch et al.
NUCLEIC ACIDS RESEARCH (2009)
The evolution of irradiance detection: melanopsin and the non-visual opsins
Stuart N. Peirson et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2009)
Post-translational modifications in circadian rhythms
Arun Mehra et al.
TRENDS IN BIOCHEMICAL SCIENCES (2009)
Light Directs Zebrafish period2 Expression via Conserved D and E Boxes
Gad Vatine et al.
PLOS BIOLOGY (2009)
Functional mechanics of the ATP-dependent Lon protease-lessons from endogenous protein and synthetic peptide substrates
Irene Lee et al.
BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS (2008)
Base excision DNA repair
D. O. Zharkov
CELLULAR AND MOLECULAR LIFE SCIENCES (2008)
Toxicology of the retina: advances in understanding the defence mechanisms and pathogenesis of drug- and light-induced retinopathy
Timothy L. Siu et al.
CLINICAL AND EXPERIMENTAL OPHTHALMOLOGY (2008)
Autonomous onset of the circadian clock in the zebrafish embryo
Marcus P. S. Dekens et al.
EMBO JOURNAL (2008)
Differential display of DNA-binding proteins reveals heat-shock factor 1 as a circadian transcription factor
Hans Reinke et al.
GENES & DEVELOPMENT (2008)
Supreme enLIGHTenment: Damage recognition and signaling in the mammalian UV response
Peter Herrlich et al.
MOLECULAR CELL (2008)
Nuclear hormone receptors for heme:: REV-ERBα and REV-ERBβ are ligand-regulated components of the mammalian clock
Thomas P. Burris
MOLECULAR ENDOCRINOLOGY (2008)
The genetics of mammalian circadian order and disorder: implications for physiology and disease
Joseph S. Takahashi et al.
NATURE REVIEWS GENETICS (2008)
Reciprocity between phase shifts and amplitude changes in the mammalian circadian clock
Sandhya R. Pulivarthy et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Melanopsin-dependent photo-perturbation reveals desynchronization underlying the singularity of mammalian circadian clocks
Hideki Ukai et al.
NATURE CELL BIOLOGY (2007)
Light signaling to the zebrafish circadian clock by Cryptochrome 1a
T. Katherine Tamai et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Phototransduction in ganglion-cell photoreceptors
David M. Berson
PFLUGERS ARCHIV-EUROPEAN JOURNAL OF PHYSIOLOGY (2007)
Trawler:: de novo regulatory motif discovery pipeline for chromatin immunoprecipitation
Laurence Ettwiller et al.
NATURE METHODS (2007)
System-driven and oscillator-dependent circadian transcription in mice with a conditionally active liver clock
Benoit Kornmann et al.
PLOS BIOLOGY (2007)
Post-translational modifications regulate the ticking of the circadian clock
Monica Gallego et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2007)
Start the clock! Circadian rhythms and development
Daniela Vallone et al.
DEVELOPMENTAL DYNAMICS (2007)
Mechanisms of cell death in oxidative stress
Stefan W. Ryter et al.
ANTIOXIDANTS & REDOX SIGNALING (2007)
Encoding the ins and outs of circadian pacemaking
Sandra J. Kuhlman et al.
JOURNAL OF BIOLOGICAL RHYTHMS (2006)
SCN outputs and the hypothalamic balance of life
A. Kalsbeek et al.
JOURNAL OF BIOLOGICAL RHYTHMS (2006)
A cryptochrome/photolyase class of enzymes with single-stranded DNA-specific photolyase activity
Christopher P. Selby et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
CUL4-DDB1 ubiquitin ligase interacts with multiple WD40-repeat proteins and regulates histone methylation
Leigh Ann Higa et al.
NATURE CELL BIOLOGY (2006)
Regulation of DNA repair by ubiquitylation
TT Huang et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2006)
Temperature regulates transcription in the zebrafish circadian clock
K Lahiri et al.
PLOS BIOLOGY (2005)
BiNGO: a Cytoscape plugin to assess overrepresentation of Gene Ontology categories in Biological Networks
S Maere et al.
BIOINFORMATICS (2005)
Common pathways in circadian and cell cycle clocks: Light-dependent activation of Fos/AP-1 in zebrafish controls CRY-1a and WEE-1
J Hirayama et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Functional development of the zebrafish pineal gland: Light-induced expression of period2 is required for onset of the circadian clock
L Ziv et al.
JOURNAL OF NEUROENDOCRINOLOGY (2005)
Imaging of single light-responsive clock cells reveals fluctuating free-running periods
AJF Carr et al.
NATURE CELL BIOLOGY (2005)
Light-dependent development of circadian gene expression in transgenic zebrafish
M Kaneko et al.
PLOS BIOLOGY (2005)
Role of lipid hydroperoxides in photo-oxidative stress signaling
AW Girotti et al.
ANTIOXIDANTS & REDOX SIGNALING (2004)
E-box function in a period gene repressed by light
D Vallone et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
Rank products: a simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments
R Breitling et al.
FEBS LETTERS (2004)
Java Treeview-extensible visualization of microarray data
AJ Saldanha
BIOINFORMATICS (2004)
Open source clustering software
MJL de Hoon et al.
BIOINFORMATICS (2004)
Bioconductor: open software development for computational biology and bioinformatics
RC Gentleman et al.
GENOME BIOLOGY (2004)
Light regulates the cell cycle in zebrafish
MPS Dekens et al.
CURRENT BIOLOGY (2003)
Teleost multiple tissue (tmt) opsin:: a candidate photopigment regulating the peripheral clocks of zebrafish?
P Moutsaki et al.
MOLECULAR BRAIN RESEARCH (2003)
Redox regulation of mammalian heat shock factor 1 is essential for Hsp gene activation and protection from stress
SG Ahn et al.
GENES & DEVELOPMENT (2003)
Cytoscape: A software environment for integrated models of biomolecular interaction networks
P Shannon et al.
GENOME RESEARCH (2003)
Light induction of a vertebrate clock gene involves signaling through blue-light receptors and MAP kinases
N Cermakian et al.
CURRENT BIOLOGY (2002)
A cell-based system that recapitulates the dynamic light-dependent regulation of the vertebrate clock
MP Pando et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)
Restricted feeding uncouples circadian oscillators in peripheral tissues from the central pacemaker in the suprachiasmatic nucleus
F Damiola et al.
GENES & DEVELOPMENT (2000)
Prostaglandin D synthase gene is involved in the regulation of non-rapid eye movement sleep
E Pinzar et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)
Light acts directly on organs and cells in culture to set the vertebrate circadian clock
D Whitmore et al.
NATURE (2000)