Related references
Note: Only part of the references are listed.New statistical potential for quality assessment of protein models and a survey of energy functions
Dmitry Rykunov et al.
BMC BIOINFORMATICS (2010)
A Probabilistic and Continuous Model of Protein Conformational Space for Template-Free Modeling
Feng Zhao et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2010)
Generalized ensemble methods for de novo structure prediction
Alena Shmygelska et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Quantitative prediction of protein-protein binding affinity with a potential of mean force considering volume correction
Yu Su et al.
PROTEIN SCIENCE (2009)
Simulated tempering yields insight into the low-resolution Rosetta scoring functions
Gregory R. Bowman et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2009)
A coarse-grained potential for fold recognition and molecular dynamics simulations of proteins
Peter Majek et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2009)
A generalized knowledge-based discriminatory function for biomolecular interactions
Brady Bernard et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2009)
Probabilistic models and machine learning in structural bioinformatics
Thomas Hamelryck
STATISTICAL METHODS IN MEDICAL RESEARCH (2009)
A generative, probabilistic model of local protein structure
Wouter Boomsma et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
A free-rotating and self-avoiding chain model for deriving statistical potentials based on protein structures
Ji Cheng et al.
BIOPHYSICAL JOURNAL (2007)
Effects of amino acid composition, finite size of proteins, and sparse statistics on distance-dependent statistical pair potentials
Dmitry Rykunov et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2007)
An iterative knowledge-based scoring function to predict protein-ligand interactions: I. Derivation of interaction potentials
Sheng-You Huang et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2006)
Minimalist Representations and the Importance of Nearest Neighbor Effects in Protein Folding Simulations
Andres Colubri et al.
JOURNAL OF MOLECULAR BIOLOGY (2006)
Statistical potential for assessment and prediction of protein structures
Min-Yi Shen et al.
PROTEIN SCIENCE (2006)
PMF scoring revisited
Ingo Muegge
JOURNAL OF MEDICINAL CHEMISTRY (2006)
Sampling realistic protein conformations using local structural bias
Thomas Hamelryck et al.
PLOS COMPUTATIONAL BIOLOGY (2006)
A composite score for predicting errors in protein structure models
David Eramian et al.
PROTEIN SCIENCE (2006)
Interfaces and the driving force of hydrophobic assembly
D Chandler
NATURE (2005)
Knowledge based potentials: the reverse Boltzmann methodology, virtual screening and molecular weight dependence
CK Kirtay et al.
QSAR & COMBINATORIAL SCIENCE (2005)
Development of novel statistical potentials for protein fold recognition
NV Buchete et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2004)
An accurate, residue-level, pair potential of mean force for folding and binding based on the distance-scaled, ideal-gas reference state
C Zhang et al.
PROTEIN SCIENCE (2004)
Deriving effective mesoscale potentials from atomistic simulations
D Reith et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2003)
Funnel sculpting for in silico assembly of secondary structure elements of proteins
B Fain et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
Propensities, probabilities, and the Boltzmann hypothesis
D Shortle
PROTEIN SCIENCE (2003)
Distance-scaled, finite ideal-gas reference state improves structure-derived potentials of mean force for structure selection and stability prediction
HY Zhou et al.
PROTEIN SCIENCE (2002)
Optimized Monte Carlo analysis for generalized ensembles
J Ferkinghoff-Borg
EUROPEAN PHYSICAL JOURNAL B (2002)
PoPMuSiC, an algorithm for predicting protein mutant stability changes. Application to prion proteins
D Gilis et al.
PROTEIN ENGINEERING (2000)
Effective energy functions for protein structure prediction
T Lazaridis et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2000)
Knowledge-based scoring function to predict protein-ligand interactions
H Gohlke et al.
JOURNAL OF MOLECULAR BIOLOGY (2000)
Share Paper
