Related references
Note: Only part of the references are listed.Supersplat-spliced RNA-seq alignment
Douglas W. Bryant et al.
BIOINFORMATICS (2010)
Genome-wide analysis of allelic expression imbalance in human primary cells by high-throughput transcriptome resequencing
Graham A. Heap et al.
HUMAN MOLECULAR GENETICS (2010)
Expansion of the eukaryotic proteome by alternative splicing
Timothy W. Nilsen et al.
NATURE (2010)
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
Cole Trapnell et al.
NATURE BIOTECHNOLOGY (2010)
Nova2 Regulates Neuronal Migration through an RNA Switch in Disabled-1 Signaling
Masato Yano et al.
NEURON (2010)
Prediction of alternative isoforms from exon expression levels in RNA-Seq experiments
Hugues Richard et al.
NUCLEIC ACIDS RESEARCH (2010)
Global and unbiased detection of splice junctions from RNA-seq data
Adam Ameur et al.
GENOME BIOLOGY (2010)
TopHat: discovering splice junctions with RNA-Seq
Cole Trapnell et al.
BIOINFORMATICS (2009)
SOAP2: an improved ultrafast tool for short read alignment
Ruiqiang Li et al.
BIOINFORMATICS (2009)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
The Spliceosome: Design Principles of a Dynamic RNP Machine
Markus C. Wahl et al.
CELL (2009)
RNA-Seq: a revolutionary tool for transcriptomics
Zhong Wang et al.
NATURE REVIEWS GENETICS (2009)
An Abundance of Ubiquitously Expressed Genes Revealed by Tissue Transcriptome Sequence Data
Daniel Ramskold et al.
PLOS COMPUTATIONAL BIOLOGY (2009)
The SR protein family
Peter J. Shepard et al.
GENOME BIOLOGY (2009)
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
Ben Langmead et al.
GENOME BIOLOGY (2009)
Optimal spliced alignments of short sequence reads
Fabio De Bona et al.
BIOINFORMATICS (2008)
Highly integrated single-base resolution maps of the epigenome in Arabidopsis
Ryan Lister et al.
CELL (2008)
Mapping short DNA sequencing reads and calling variants using mapping quality scores
Heng Li et al.
GENOME RESEARCH (2008)
Alternative isoform regulation in human tissue transcriptomes
Eric T. Wang et al.
NATURE (2008)
Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution
Brian T. Wilhelm et al.
NATURE (2008)
Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing
Qun Pan et al.
NATURE GENETICS (2008)
Mapping and quantifying mammalian transcriptomes by RNA-Seq
Ali Mortazavi et al.
NATURE METHODS (2008)
Substantial biases in ultra-short read data sets from high-throughput DNA sequencing
Juliane C. Dohm et al.
NUCLEIC ACIDS RESEARCH (2008)
The Long March: A Sample Preparation Technique that Enhances Contig Length and Coverage by High-Throughput Short-Read Sequencing
Katherine Sorber et al.
PLOS ONE (2008)
The transcriptional landscape of the yeast genome defined by RNA sequencing
Ugrappa Nagalakshmi et al.
SCIENCE (2008)
cDNA sequences reveal considerable gene prediction inaccuracy in the Plasmodium falciparum genome
Fangli Lu et al.
BMC GENOMICS (2007)
ASD: a bioinformatics resource on alternative splicing
Stefan Stamm et al.
NUCLEIC ACIDS RESEARCH (2006)
Species-specific variation of alternative splicing and transcriptional initiation in six eukaryotes
H Nagasaki et al.
GENE (2005)
NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins
KD Pruitt et al.
NUCLEIC ACIDS RESEARCH (2005)
GenBank: update
DA Benson et al.
NUCLEIC ACIDS RESEARCH (2004)
WebLogo: A sequence logo generator
GE Crooks et al.
GENOME RESEARCH (2004)
Genome sequence of the human malaria parasite Plasmodium falciparum
MJ Gardner et al.
NATURE (2002)
XBP1 mRNA is induced by ATF6 and spliced by IRE1 in response to ER stress to produce a highly active transcription factor
H Yoshida et al.
CELL (2001)
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
S Kaul et al.
NATURE (2000)