Related references
Note: Only part of the references are listed.Reverse-Engineering Transcriptional Modules from Gene Expression Data
Tom Michoel et al.
CHALLENGES OF SYSTEMS BIOLOGY: COMMUNITY EFFORTS TO HARNESS BIOLOGICAL COMPLEXITY (2009)
Lessons from the DREAM2 Challenges A Community Effort to Assess Biological Network Inference
Gustavo Stolovitzky et al.
CHALLENGES OF SYSTEMS BIOLOGY: COMMUNITY EFFORTS TO HARNESS BIOLOGICAL COMPLEXITY (2009)
Inference of Regulatory Gene Interactions from Expression Data Using Three-Way Mutual Information
John Watkinson et al.
CHALLENGES OF SYSTEMS BIOLOGY: COMMUNITY EFFORTS TO HARNESS BIOLOGICAL COMPLEXITY (2009)
GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists
Eran Eden et al.
BMC BIOINFORMATICS (2009)
Integrated Weighted Gene Co-expression Network Analysis with an Application to Chronic Fatigue Syndrome
Angela P. Presson et al.
BMC SYSTEMS BIOLOGY (2009)
Cross-talk between MCP-3 and TGFβ promotes fibroblast collagen biosynthesis
Voon H. Ong et al.
EXPERIMENTAL CELL RESEARCH (2009)
Gene expression patterns during intramuscular fat development in cattle
Y. H. Wang et al.
JOURNAL OF ANIMAL SCIENCE (2009)
A census of human transcription factors: function, expression and evolution
Juan M. Vaquerizas et al.
NATURE REVIEWS GENETICS (2009)
The Genome Sequence of Taurine Cattle: A Window to Ruminant Biology and Evolution
Christine G. Elsik et al.
SCIENCE (2009)
Diversity and Complexity in DNA Recognition by Transcription Factors
Gwenael Badis et al.
SCIENCE (2009)
A Differential Wiring Analysis of Expression Data Correctly Identifies the Gene Containing the Causal Mutation
Nicholas J. Hudson et al.
PLOS COMPUTATIONAL BIOLOGY (2009)
Learning a Prior on Regulatory Potential from eQTL Data
Su-In Lee et al.
PLOS GENETICS (2009)
Discerning static and causal interactions in genome-wide reverse engineering problems
Mattia Zampieri et al.
BIOINFORMATICS (2008)
Combining partial correlation and an information theory approach to the reversed engineering of gene co-expression networks
Antonio Reverter et al.
BIOINFORMATICS (2008)
Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences
Michael F. Berger et al.
CELL (2008)
Fast/glycolytic muscle fiber growth reduces fat mass and improves metabolic parameters in obese mice
Yasuhiro Izumiya et al.
CELL METABOLISM (2008)
Leptin inhibits rosiglitazone-induced adipogenesis in murine primary adipocytes
Sang Dal Rhee et al.
MOLECULAR AND CELLULAR ENDOCRINOLOGY (2008)
eQED: an efficient method for interpreting eQTL associations using protein networks
Silpa Suthram et al.
MOLECULAR SYSTEMS BIOLOGY (2008)
Evolvability and hierarchy in rewired bacterial gene networks
Mark Isalan et al.
NATURE (2008)
Control of Muscle Mitochondria by Insulin Entails Activation of Akt2-mtNOS Pathway: Implications for the Metabolic Syndrome
Paola Finocchietto et al.
PLOS ONE (2008)
Human Gene Coexpression Landscape: Confident Network Derived from Tissue Transcriptomic Profiles
Carlos Prieto et al.
PLOS ONE (2008)
Evolution of eukaryotic transcription circuits
Brian B. Tuch et al.
SCIENCE (2008)
FoxM1 regulates growth factor-induced expression of kinase-interacting stathmin (KIS) to promote cell cycle progression
Vladimir Petrovic et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2008)
Gene expression studies of developing bovine longissimus muscle from two different beef cattle breeds
Sigrid A. Lehnert et al.
BMC DEVELOPMENTAL BIOLOGY (2007)
Weighted gene coexpression network analysis strategies applied to mouse weight
Tova F. Fuller et al.
MAMMALIAN GENOME (2007)
Orphan nuclear receptor estrogen-related receptor α is essential for adaptive thermogenesis
Josep A. Villena et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Metabolic adaptations to marathon training and racing
John A. Hawley et al.
SPORTS MEDICINE (2007)
A gene coexpression network for bovine skeletal muscle inferred from microarray data
Antonio Reverter et al.
PHYSIOLOGICAL GENOMICS (2006)
Gene expression profiling of bovine skeletal muscle in response to and during recovery from chronic and severe undernutrition
S. A. Lehnert et al.
JOURNAL OF ANIMAL SCIENCE (2006)
Lsh is required for meiotic chromosome synapsis and retrotransposon silencing in female germ cells
Rabindranath De La Fuente et al.
NATURE CELL BIOLOGY (2006)
CDCA4 is an E2F transcription factor family-induced nuclear factor that regulates E2F-dependent transcriptional activation and cell proliferation
Reiko Hayashi et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2006)
Redundant roles of Sox17 and Sox18 in postnatal angiogenesis in mice
Toshiyasu Matsui et al.
JOURNAL OF CELL SCIENCE (2006)
Microarray analysis of PDGFRα+ populations in ES cell differentiation culture identifies genes involved in differentiation of mesoderm and mesenchyme including ARID3b that is essential for development of embryonic mesenchymal cells
A Takebe et al.
DEVELOPMENTAL BIOLOGY (2006)
MusTRD can regulate postnatal fiber-specific expression
LL Issa et al.
DEVELOPMENTAL BIOLOGY (2006)
Global and gene-specific analyses show distinct roles for Myod and Myog at a common set of promoters
Y Cao et al.
EMBO JOURNAL (2006)
The next generation of literature analysis: Integration of genomic analysis into text mining
M Scherf et al.
BRIEFINGS IN BIOINFORMATICS (2005)
BiNGO: a Cytoscape plugin to assess overrepresentation of Gene Ontology categories in Biological Networks
S Maere et al.
BIOINFORMATICS (2005)
Constructing transcriptional regulatory networks
A Blais et al.
GENES & DEVELOPMENT (2005)
Matlnspector and beyond: promoter analysis based on transcription factor binding sites
K Cartharius et al.
BIOINFORMATICS (2005)
Mitochondria, telomeres and cell senescence
JF Passos et al.
EXPERIMENTAL GERONTOLOGY (2005)
Reverse engineering of regulatory networks in human B cells
K Basso et al.
NATURE GENETICS (2005)
An initial blueprint for myogenic differentiation
A Blais et al.
GENES & DEVELOPMENT (2005)
Characterization of E2F8, a novel E2F-like cell-cycle regulated repressor of E2F-activated transcription
J Christensen et al.
NUCLEIC ACIDS RESEARCH (2005)
Quantitative genetic variation: a post-modern view
M Farrall
HUMAN MOLECULAR GENETICS (2004)
Network biology:: Understanding the cell's functional organization
AL Barabási et al.
NATURE REVIEWS GENETICS (2004)
Interaction of human HSP22 (HSPB8) with other small heat shock proteins
XK Sun et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2004)
Angiopoietin-3 is tethered on the cell surface via heparan sulfate proteoglycans
Y Xu et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2004)
Gene co-expression network topology provides a framework for molecular characterization of cellular state
SL Carter et al.
BIOINFORMATICS (2004)
Effect of a C/EBP gene replacement on mitochondrial biogenesis in fat cells
CH Chin et al.
GENES & DEVELOPMENT (2004)
Six1 and Eya1 expression can reprogram adult muscle from the slow-twitch phenotype into the fast-twitch phenotype
R Grifone et al.
MOLECULAR AND CELLULAR BIOLOGY (2004)
Coexpression analysis of human genes across many microarray data sets
HK Lee et al.
GENOME RESEARCH (2004)
Regulation of muscle fiber type and running endurance by PPARδ
YX Wang et al.
PLOS BIOLOGY (2004)
Myosin light chain isoform expression among single mammalian skeletal muscle fibers: species variations
S Bicer et al.
JOURNAL OF MUSCLE RESEARCH AND CELL MOTILITY (2004)
CTIP1 and CTIP2 are differentially expressed during mouse embryogenesis
M Leid et al.
GENE EXPRESSION PATTERNS (2004)
The highly conserved Ndc80 complex is required for kinetochore assembly, chromosome congression, and spindle checkpoint activity
ML McCleland et al.
GENES & DEVELOPMENT (2003)
Cytoscape: A software environment for integrated models of biomolecular interaction networks
P Shannon et al.
GENOME RESEARCH (2003)
Ssdp proteins interact with the LIM-domain-binding protein Ldb1 to regulate development
L Chen et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
Transcriptional co-activator PGC-1α drives the formation of slow-twitch muscle fibres
J Lin et al.
NATURE (2002)
Single cysteine to tyrosine transition inactivates the growth inhibitory function of Piedmontese myostatin
C Berry et al.
AMERICAN JOURNAL OF PHYSIOLOGY-CELL PHYSIOLOGY (2002)
Mitochondrial transcription factors B1 and B2 activate transcription of human mtDNA
M Falkenberg et al.
NATURE GENETICS (2002)
The transcriptional activation function of the HIF-like factor requires phosphorylation at a conserved threonine
K Gradin et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2002)
Formation of brainstem (nor)adrenergic centers and first-order relay visceral sensory neurons is dependent on homeodomain protein Rnx/Tlx3
Y Qian et al.
GENES & DEVELOPMENT (2001)
Effects of genetic background on thermoregulation and fatty acid-induced uncoupling of mitochondria in UCP1-deficient mice
WE Hofmann et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2001)
Genetic network inference: from co-expression clustering to reverse engineering
P D'haeseleer et al.
BIOINFORMATICS (2000)
Expression of two novel mouse Iroquois homeobox genes during neurogenesis
DR Cohen et al.
MECHANISMS OF DEVELOPMENT (2000)
Share Paper
