4.6 Article

A Computational Screen for Type I Polyketide Synthases in Metagenomics Shotgun Data

Related references

Note: Only part of the references are listed.
Article Multidisciplinary Sciences

Evolution of polyketide synthases in bacteria

Christian P. Ridley et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Biochemical Research Methods

Polyketide synthase genes and the natural products potential of Dictyostelium discoideum

J. Zucko et al.

BIOINFORMATICS (2007)

Review Microbiology

Get the most out of your metagenome: computational analysis of environmental sequence data

Jeroen Raes et al.

CURRENT OPINION IN MICROBIOLOGY (2007)

Article Biochemistry & Molecular Biology

Comprehensive analysis of distinctive polyketide and nonribosomal peptide structural motifs encoded in microbial genomes

Yohsuke Minowa et al.

JOURNAL OF MOLECULAR BIOLOGY (2007)

Article Biochemical Research Methods

UniRef: comprehensive and non-redundant UniProt reference clusters

Baris E. Suzek et al.

BIOINFORMATICS (2007)

Article Biochemistry & Molecular Biology

Structural and functional diversity of the microbial kinome

Natarajan Kannan et al.

PLOS BIOLOGY (2007)

Article Biotechnology & Applied Microbiology

Prediction of effective genome size in metagenomic samples

Jeroen Raes et al.

GENOME BIOLOGY (2007)

Article Biochemical Research Methods

Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation

Ivica Letunic et al.

BIOINFORMATICS (2007)

Article Biotechnology & Applied Microbiology

Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities

Hector Garcia Martin et al.

NATURE BIOTECHNOLOGY (2006)

Article Biochemical Research Methods

Natural biocombinatorics in the polyketide synthase genes of the actinobacterium Streptomyces avermitilis

Holger Jenke-Kodama et al.

PLOS COMPUTATIONAL BIOLOGY (2006)

Article Multidisciplinary Sciences

Metagenomic analysis of the human distal gut microbiome

Steven R. Gill et al.

SCIENCE (2006)

Article Biochemistry & Molecular Biology

SMART 5: domains in the context of genomes and networks

Ivica Letunic et al.

NUCLEIC ACIDS RESEARCH (2006)

Article Biochemistry & Molecular Biology

Pfam: clans, web tools and services

Robert D. Finn et al.

NUCLEIC ACIDS RESEARCH (2006)

Article Biochemistry & Molecular Biology

Evolutionary implications of bacterial polyketide synthases

H Jenke-Kodama et al.

MOLECULAR BIOLOGY AND EVOLUTION (2005)

Article Evolutionary Biology

Evolution of a microbial nitrilase gene family: a comparative and environmental genomics study

M Podar et al.

BMC EVOLUTIONARY BIOLOGY (2005)

Article Biotechnology & Applied Microbiology

Metagenomic analysis reveals diverse polyketide synthase gene clusters in microorganisms associated with the marine sponge Discodermia dissoluta

A Schirmer et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2005)

Review Microbiology

Microbial community genomics in the ocean

EE DeLong

NATURE REVIEWS MICROBIOLOGY (2005)

Article Multidisciplinary Sciences

Comparative metagenomics of microbial communities

SG Tringe et al.

SCIENCE (2005)

Review Biotechnology & Applied Microbiology

Screening for novel enzymes from metagenome and SIGEX, as a way to improve it

J Yun et al.

MICROBIAL CELL FACTORIES (2005)

Article Biochemical Research Methods

Clann: investigating phylogenetic information through supertree analyses

CJ Creevey et al.

BIOINFORMATICS (2005)

Article Multidisciplinary Sciences

Environmental genome shotgun sequencing of the Sargasso Sea

JC Venter et al.

SCIENCE (2004)

Article Biochemistry & Molecular Biology

MUSCLE: multiple sequence alignment with high accuracy and high throughput

RC Edgar

NUCLEIC ACIDS RESEARCH (2004)

Article Multidisciplinary Sciences

Phylogenomic analysis of type I polyketide synthase genes in pathogenic and saprobic ascomycetes

S Kroken et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)

Article Evolutionary Biology

A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood

S Guindon et al.

SYSTEMATIC BIOLOGY (2003)

Article Biochemistry & Molecular Biology

SEARCHPKS: a program for detection and analysis of polyketide synthase domains

G Yadav et al.

NUCLEIC ACIDS RESEARCH (2003)

Review Biochemistry & Molecular Biology

Polyketide biosynthesis beyond the type I, II and III polyketide synthase paradigms

B Shen

CURRENT OPINION IN CHEMICAL BIOLOGY (2003)

Article Multidisciplinary Sciences

Type I polyketide synthase requiring a discrete acyltransferase for polyketide biosynthesis

YQ Cheng et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)

Article Biochemistry & Molecular Biology

The TIGRFAMs database of protein families

DH Haft et al.

NUCLEIC ACIDS RESEARCH (2003)

Review Biochemistry & Molecular Biology

Polyketide biosynthesis: a millennium review

J Staunton et al.

NATURAL PRODUCT REPORTS (2001)

Article Multidisciplinary Sciences

Bacterial rhodopsin:: Evidence for a new type of phototrophy in the sea

O Béjà et al.

SCIENCE (2000)

Article Biochemistry & Molecular Biology

Database resources of the National Center for Biotechnology Information

DL Wheeler et al.

NUCLEIC ACIDS RESEARCH (2000)