Related references
Note: Only part of the references are listed.An unanticipated lack of consensus cytotoxic T lymphocyte epitopes in HIV-1 databases: the contribution of prediction programs
Ingrid M. M. Scheliens et al.
AIDS (2008)
Role of cytotoxic T-lymphocyte-mediated immune selection in a dominant human leukocyte antigen-B8-restricted cytotoxic T-lymphocyte epitope in nef
Kaa Maurer et al.
JAIDS-JOURNAL OF ACQUIRED IMMUNE DEFICIENCY SYNDROMES (2008)
The MHC class I peptide repertoire is molded by the transcriptome
Marie-Helene Fortier et al.
JOURNAL OF EXPERIMENTAL MEDICINE (2008)
Broadly immunogenic HLA class I supertype-restricted elite CTL epitopes recognized in a diverse population infected with different HIV-1 subtypes
Carina L. Perez et al.
JOURNAL OF IMMUNOLOGY (2008)
Functional characterization of the human immunodeficiency virus type 1 Nef acidic domain
Laura L. Baugh et al.
JOURNAL OF VIROLOGY (2008)
Amino Acid Similarity Accounts for T Cell Cross-Reactivity and for Holes in the T Cell Repertoire
Sune Frankild et al.
PLOS ONE (2008)
Lack of Evidence for Changing Virulence of HIV-1 in North America
Joshua T. Herbeck et al.
PLOS ONE (2008)
Transmission of HIV-1CTL escape variants provides HLA-mismatched recipients with a survival advantage
Denis R. Chopera et al.
PLOS PATHOGENS (2008)
Pol-specific CD8+ T cells recognize simian immunodeficiency virus-infected cells prior to nef-mediated major histocompatibility complex class I Downregulation
Jonah B. Sacha et al.
JOURNAL OF VIROLOGY (2007)
Large-scale validation of methods for cytotoxic T-lymphocyte epitope prediction
Mette V. Larsen et al.
BMC BIOINFORMATICS (2007)
Viral replication capacity as a correlate of HLA B57/B5801-associated nonprogressive HIV-1 infection
Marjon Navis et al.
JOURNAL OF IMMUNOLOGY (2007)
Evidence of differential HLA class I-Mediated viral evolution in functional and Accessory/Regulatory genes of HIV-1
Zabrina L. Brumme et al.
PLOS PATHOGENS (2007)
A quantitative analysis of the variables affecting the repertoire of T cell specificities recognized after vaccinia virus infection
Erika Assarsson et al.
JOURNAL OF IMMUNOLOGY (2007)
Effective T-cell responses select human immunodeficiency virus mutants and slow disease progression
A. J. Frater et al.
JOURNAL OF VIROLOGY (2007)
Founder effects in the assessment of HIV polymorphisms and HLA allele associations
Tanmoy Bhattacharya et al.
SCIENCE (2007)
Gag-specific CD8+ T lymphocytes recognize infected cells before AIDS-virus integration and viral protein expression
Jonah B. Sacha et al.
JOURNAL OF IMMUNOLOGY (2007)
Adaptation to human populations is revealed by within-host polymorphisms in HIV-1 and hepatitis C virus
Art F. Y. Poon et al.
PLOS PATHOGENS (2007)
Sequential Broadening of CTL Responses in Early HIV-1 Infection Is Associated with Viral Escape
Annika C. Karlsson et al.
PLOS ONE (2007)
Rapid reversion of sequence polymorphisms dominates early human immunodeficiency virus type 1 evolution
Bin Li et al.
JOURNAL OF VIROLOGY (2007)
The validity of predicted T-cell epitopes
Claus Lundegaard et al.
TRENDS IN BIOTECHNOLOGY (2006)
A community resource benchmarking predictions of peptide binding to MHC-I molecules
Bjoern Peters et al.
PLOS COMPUTATIONAL BIOLOGY (2006)
Inefficient cytotoxic T lymphocyte-mediated killing of HIV-1-infected cells in vivo
B Asquith et al.
PLOS BIOLOGY (2006)
EpiJen: a server for multistep T cell epitope prediction
IA Doytchinova et al.
BMC BIOINFORMATICS (2006)
CD8+ T cell epitope-flanking mutations disrupt proteasomal processing of HIV-1 Nef
A Milicic et al.
JOURNAL OF IMMUNOLOGY (2005)
MHC class I alleles and their exploration of the antigen-processing machinery
TAM Groothuis et al.
IMMUNOLOGICAL REVIEWS (2005)
De novo generation of escape variant-specific CD8+ T-cell responses following cytotoxic T-lymphocyte escape in chronic human immunodeficiency virus type 1 infection
TM Allen et al.
JOURNAL OF VIROLOGY (2005)
An integrative approach to CTL epitope prediction: A combined algorithm integrating MHC class I binding, TAP transport efficiency, and proteasomal cleavage predictions
MV Larsen et al.
EUROPEAN JOURNAL OF IMMUNOLOGY (2005)
Generating quantitative models describing the sequence specificity of biological processes with the stabilized matrix method
B Peters et al.
BMC BIOINFORMATICS (2005)
Chicken TAP genes differ from their human orthologues in locus organisation, size, sequence features and polymorphism
BA Walker et al.
IMMUNOGENETICS (2005)
Modeling the MHC class I pathway by combining predictions of proteasomal cleavage, TAP transport and MHC class I binding
S Tenzer et al.
CELLULAR AND MOLECULAR LIFE SCIENCES (2005)
Transmission and accumulation of CTL escape variants drive negative associations between HIV polymorphisms and HLA
A Leslie et al.
JOURNAL OF EXPERIMENTAL MEDICINE (2005)
Dynamic immune responses maintain cytotoxic T lymphocyte epitope mutations in transmitted simian immunodeficiency virus variants
DH Barouch et al.
NATURE IMMUNOLOGY (2005)
HIV evolution: CTL escape mutation and reversion after transmission
AJ Leslie et al.
NATURE MEDICINE (2004)
Analysis of 'driver' and 'passenger' CD8+ T-cell responses against variable viruses
A Zafiropoulos et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2004)
MHC polymorphism under host-pathogen coevolution
JAM Borghans et al.
IMMUNOGENETICS (2004)
Impaired processing and presentation of cytotoxic-T-lymphocyte (CTL) epitopes are major escape mechanisms from CTL immune pressure in human immunodeficiency virus type 1 infection
Y Yokomaku et al.
JOURNAL OF VIROLOGY (2004)
Discriminating self from nonself with short peptides from large proteomes
NJ Burroughs et al.
IMMUNOGENETICS (2004)
Frequent transmission of Cytotoxic-T-Lymphocyte escape mutants of human immunodeficiency virus type 1 in the highly HLA-A24-positive Japanese population
T Furutsuki et al.
JOURNAL OF VIROLOGY (2004)
Selection, transmission, and reversion of an antigen-processing cytotoxic T-lymphocyte escape mutation in human immunodeficiency virus type 1 infection
TM Allen et al.
JOURNAL OF VIROLOGY (2004)
Improved prediction of MHC class I and class II epitopes using a novel Gibbs sampling approach
M Nielsen et al.
BIOINFORMATICS (2004)
Evolutionary and functional perspectives of the major histocompatibility complex class I antigen-processing machinery
KM Paulsson
CELLULAR AND MOLECULAR LIFE SCIENCES (2004)
Most antiviral CD8 T cells during chronic viral infection do not express high levels of perforin and are not directly cytotoxic
D Zhang et al.
BLOOD (2003)
HIV type 1 abrogates TAP-mediated transport of antigenic peptides presented by MHC class 1
O Kutsch et al.
AIDS RESEARCH AND HUMAN RETROVIRUSES (2002)
Clustering patterns of cytotoxic T-lymphocyte epitopes in human immunodeficiency virus type 1 (HIV-1) proteins reveal imprints of immune evasion on HIV-1 global variation
K Yusim et al.
JOURNAL OF VIROLOGY (2002)
AIDS - Diversity considerations in HIV-1 vaccine selection
B Gaschen et al.
SCIENCE (2002)
Evidence of HIV-1 adaptation to HLA-restricted immune responses at a population level
CB Moore et al.
SCIENCE (2002)
Polymorphisms in HLA class I genes associated with both favorable prognosis of human immunodeficiency virus (HIV) type 1 infection and positive cytotoxic T-lymphocyte responses to ALVAC-HIV recombinant canarypox vaccines
RA Kaslow et al.
JOURNAL OF VIROLOGY (2001)
Evolution and transmission of stable CTL escape mutations in HIV infection
PJR Goulder et al.
NATURE (2001)
Timing the ancestor of the HIV-1 pandemic strains
B Korber et al.
SCIENCE (2000)
Abrogation of CTL epitope processing by single amino acid substitution flanking the C-terminal proteasome cleavage site
NJ Beekman et al.
JOURNAL OF IMMUNOLOGY (2000)