Related references
Note: Only part of the references are listed.oPOSSUM: integrated tools for analysis of regulatory motif over-representation
Shannan J. Ho Sui et al.
NUCLEIC ACIDS RESEARCH (2007)
Epigenetic reprogramming of OCT4 and NANOG regulatory regions by embryonal carcinoma cell extract
Christel T. Freberg et al.
MOLECULAR BIOLOGY OF THE CELL (2007)
Genome-wide analysis of mammalian promoter architecture and evolution
Piero Carninci et al.
NATURE GENETICS (2006)
Epigenetic modulation of tumor suppressor CCAAT/Enhancer binding protein a activity in lung cancer
T Tada et al.
JNCI-JOURNAL OF THE NATIONAL CANCER INSTITUTE (2006)
A systematic model to predict transcriptional regulatory mechanisms based on over representation of transcription factor binding profiles
LW Chang et al.
GENOME RESEARCH (2006)
A global map of p53 transcription-factor binding sites in the human genome
CL Wei et al.
CELL (2006)
TRANSFAC (R) and its module TRANSCompel (R): transcriptional gene regulation in eukaryotes
V. Matys et al.
NUCLEIC ACIDS RESEARCH (2006)
Assessing computational tools for the discovery of transcription factor binding sites
M Tompa et al.
NATURE BIOTECHNOLOGY (2005)
NestedMICA: sensitive inference of over-represented motifs in nucleic acid sequence
TA Down et al.
NUCLEIC ACIDS RESEARCH (2005)
Applied bioinformatics for the identification of regulatory elements
WW Wasserman et al.
NATURE REVIEWS GENETICS (2004)
Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs
S Cawley et al.
CELL (2004)
CREME:: Cis-Regulatory Module Explorer for the human genome
R Sharan et al.
NUCLEIC ACIDS RESEARCH (2004)
ConSite: web-based prediction of regulatory elements using cross-species comparison
A Sandelin et al.
NUCLEIC ACIDS RESEARCH (2004)
JASPAR: an open-access database for eukaryotic transcription factor binding profiles
A Sandelin et al.
NUCLEIC ACIDS RESEARCH (2004)
Comparative genomics: Genome-wide analysis in metazoan eukaryotes
A Ureta-Vidal et al.
NATURE REVIEWS GENETICS (2003)
Toucan:: deciphering the cis-regulatory logic of coregulated genes
S Aerts et al.
NUCLEIC ACIDS RESEARCH (2003)
Rank order metrics for quantifying the association of sequence features with gene regulation
ND Clarke et al.
BIOINFORMATICS (2003)
DBTSS: DataBase of human transcriptional start sites and full-length cDNAs
Y Suzuki et al.
NUCLEIC ACIDS RESEARCH (2002)
A genomic regulatory network for development
EH Davidson et al.
SCIENCE (2002)
A higher-order background model improves the detection of promoter regulatory elements by Gibbs sampling
G Thijs et al.
BIOINFORMATICS (2001)
Share Paper
