Journal
PLASMA PROCESSES AND POLYMERS
Volume 12, Issue 2, Pages 162-171Publisher
WILEY-V C H VERLAG GMBH
DOI: 10.1002/ppap.201400064
Keywords
amino acids; cold plasma; computer modeling; molecular dynamics; radicals
Funding
- Fund for Scientific Research Flanders (FWO)
- Hercules Foundation
- Flemish Government (Department EWI)
- Universiteit Antwerpen
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Reactive molecular dynamics simulations are performed to study the interaction of reactive oxygen species, such as OH, HO2 and H2O2, with the endotoxic biomolecule lipid A of the gram-negative bacterium Escherichia coli. It is found that the aforementioned plasma species can destroy the lipid A, which consequently results in reducing its toxic activity. A clear difference is observed in the bond breaking mechanisms upon impact of HO2 radicals and H2O2 molecules on one hand and OH radicals on the other hand. Our simulation results are in good agreement with experimental observations.
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