4.8 Article

The genome-scale metabolic network of Ectocarpus siliculosus (EctoGEM): a resource to study brown algal physiology and beyond

Related references

Note: Only part of the references are listed.
Article Plant Sciences

Mannitol metabolism in brown algae involves a new phosphatase family

Agns Groisillier et al.

JOURNAL OF EXPERIMENTAL BOTANY (2014)

Article Biochemistry & Molecular Biology

A metabolic approach to study algal-bacterial interactions in changing environments

Simon M. Dittami et al.

MOLECULAR ECOLOGY (2014)

Article Multidisciplinary Sciences

Efficient ethanol production from brown macroalgae sugars by a synthetic yeast platform

Maria Enquist-Newman et al.

NATURE (2014)

Article Biochemistry & Molecular Biology

Computational prediction and experimental validation of microRNAs in the brown alga Ectocarpus siliculosus

Bernard Billoud et al.

NUCLEIC ACIDS RESEARCH (2014)

Editorial Material Biotechnology & Applied Microbiology

Opportunities and challenges for seaweed in the biobased economy

Jaap W. van Hal et al.

TRENDS IN BIOTECHNOLOGY (2014)

Article Mathematical & Computational Biology

COBRApy: COnstraints-Based Reconstruction and Analysis for Python

Ali Ebrahim et al.

BMC SYSTEMS BIOLOGY (2013)

Review Biochemical Research Methods

Plant genome-scale metabolic reconstruction and modelling

Cristiana Gomes de Oliveira Dal'Molin et al.

CURRENT OPINION IN BIOTECHNOLOGY (2013)

Review Microbiology

The challenge of constructing, classifying, and representing metabolic pathways

Ron Caspi et al.

FEMS MICROBIOLOGY LETTERS (2013)

Review Biotechnology & Applied Microbiology

Marine macroalgae: an untapped resource for producing fuels and chemicals

Na Wei et al.

TRENDS IN BIOTECHNOLOGY (2013)

Article Biochemical Research Methods

The RAVEN Toolbox and Its Use for Generating a Genome-scale Metabolic Model for Penicillium chrysogenum

Rasmus Agren et al.

PLOS COMPUTATIONAL BIOLOGY (2013)

Article Mathematical & Computational Biology

A genome-scale metabolic model of the lipid-accumulating yeast Yarrowia lipolytica

Nicolas Loira et al.

BMC SYSTEMS BIOLOGY (2012)

Article Plant Sciences

Genome-wide metabolic network reconstruction of the picoalga Ostreococcus

Elias W. Krumholz et al.

JOURNAL OF EXPERIMENTAL BOTANY (2012)

Article Biochemistry & Molecular Biology

Primary amines protect against retinal degeneration in mouse models of retinopathies

Akiko Maeda et al.

NATURE CHEMICAL BIOLOGY (2012)

Letter Biochemical Research Methods

ORCAE: online resource for community annotation of eukaryotes

Lieven Sterck et al.

NATURE METHODS (2012)

Article Biochemistry & Molecular Biology

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

Ron Caspi et al.

NUCLEIC ACIDS RESEARCH (2012)

Review Biochemistry & Molecular Biology

Are we ready for genome-scale modeling in plants?

Eva Collakova et al.

PLANT SCIENCE (2012)

Article Multidisciplinary Sciences

An Engineered Microbial Platform for Direct Biofuel Production from Brown Macroalgae

Adam J. Wargacki et al.

SCIENCE (2012)

Article Biotechnology & Applied Microbiology

AlgaGEM - a genome-scale metabolic reconstruction of algae based on the Chlamydomonas reinhardtii genome

Cristiana Gomes de Oliveira Dal'Molin et al.

BMC GENOMICS (2011)

Article Biochemistry & Molecular Biology

Microarray estimation of genomic inter-strain variability in the genus Ectocarpus (Phaeophyceae)

Simon M. Dittami et al.

BMC MOLECULAR BIOLOGY (2011)

Editorial Material Biochemistry & Molecular Biology

Brown algae

J. Mark Cock et al.

CURRENT BIOLOGY (2011)

Article Biochemistry & Molecular Biology

Characterization of GDP-mannose Dehydrogenase from the Brown Alga Ectocarpus siliculosus Providing the Precursor for the Alginate Polymer

Raimund Tenhaken et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2011)

Article Biochemistry & Molecular Biology

Metabolic network reconstruction of Chlamydomonas offers insight into light-driven algal metabolism

Roger L. Chang et al.

MOLECULAR SYSTEMS BIOLOGY (2011)

Review Biotechnology & Applied Microbiology

Toward Systems Biology in Brown Algae to Explore Acclimation and Adaptation to the Shore Environment

Thierry Tonon et al.

OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY (2011)

Article Biochemistry & Molecular Biology

ETOILE Regulates Developmental Patterning in the Filamentous Brown Alga Ectocarpus siliculosus

Aude Le Bail et al.

PLANT CELL (2011)

Article Multidisciplinary Sciences

OUROBOROS is a master regulator of the gametophyte to sporophyte life cycle transition in the brown alga Ectocarpus

Susana M. Coelho et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Multidisciplinary Sciences

Algae and humans share a molybdate transporter

Manuel Tejada-Jimenez et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Multidisciplinary Sciences

The Ectocarpus genome and the independent evolution of multicellularity in brown algae

J. Mark Cock et al.

NATURE (2010)

Article Biotechnology & Applied Microbiology

High-throughput generation, optimization and analysis of genome-scale metabolic models

Christopher S. Henry et al.

NATURE BIOTECHNOLOGY (2010)

Article Biotechnology & Applied Microbiology

What is flux balance analysis?

Jeffrey D. Orth et al.

NATURE BIOTECHNOLOGY (2010)

Article Biochemical Research Methods

A protocol for generating a high-quality genome-scale metabolic reconstruction

Ines Thiele et al.

NATURE PROTOCOLS (2010)

Article Biochemistry & Molecular Biology

InParanoid 7: new algorithms and tools for eukaryotic orthology analysis

Gabriel Ostlund et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Plant Sciences

AraGEM, a Genome-Scale Reconstruction of the Primary Metabolic Network in Arabidopsis

Cristiana Gomes de Oliveira Dal'Molin et al.

PLANT PHYSIOLOGY (2010)

Article Biochemistry & Molecular Biology

An integrative approach towards completing genome-scale metabolic networks

Nils Christian et al.

MOLECULAR BIOSYSTEMS (2009)

Article Plant Sciences

A Genome-Scale Metabolic Model of Arabidopsis and Some of Its Properties

Mark G. Poolman et al.

PLANT PHYSIOLOGY (2009)

Article Plant Sciences

Tyrosine and Phenylalanine Are Synthesized within the Plastids in Arabidopsis

Pascal Rippert et al.

PLANT PHYSIOLOGY (2009)

Article Biochemistry & Molecular Biology

Phylogeny.fr: robust phylogenetic analysis for the non-specialist

A. Dereeper et al.

NUCLEIC ACIDS RESEARCH (2008)

Article Biochemistry & Molecular Biology

InParanoid 6: eukaryotic ortholog clusters with inparalogs

Ann-Charlotte Berglund et al.

NUCLEIC ACIDS RESEARCH (2008)

Article Biochemistry & Molecular Biology

Phenylalanine biosynthesis in Arabidopsis thaliana -: Identification and characterization of arogenate dehydratases

Man-Ho Cho et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2007)

Article Multidisciplinary Sciences

Deep-water kelp refugia as potential hotspots of tropical marine diversity and productivity

Michael H. Graham et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Biochemistry & Molecular Biology

MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0

Koichiro Tamura et al.

MOLECULAR BIOLOGY AND EVOLUTION (2007)

Review Biotechnology & Applied Microbiology

Salt-regulated mannitol metabolism in algae

K Iwamoto et al.

MARINE BIOTECHNOLOGY (2005)

Article Biochemistry & Molecular Biology

OrthoMCL: Identification of ortholog groups for eukaryotic genomes

L Li et al.

GENOME RESEARCH (2003)

Article Biochemistry & Molecular Biology

Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network

J Förster et al.

GENOME RESEARCH (2003)

Article Biochemistry & Molecular Biology

Purification and kinetic analysis of the two recombinant arogenate dehydrogenase isoforms of Arabidopsis thaliana

P Rippert et al.

EUROPEAN JOURNAL OF BIOCHEMISTRY (2002)

Article Multidisciplinary Sciences

The Escherichia coli MG1655 in silico metabolic genotype:: Its definition, characteristics, and capabilities

JS Edwards et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)