4.7 Article

DNA viewed as an out-of-equilibrium structure

Related references

Note: Only part of the references are listed.
Article Biology

Exact Goodness-of-Fit Tests for Markov Chains

J. Besag et al.

BIOMETRICS (2013)

Article Physics, Multidisciplinary

Markov chain order estimation with conditional mutual information

M. Papapetrou et al.

PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS (2013)

Article Biochemical Research Methods

Dragon PolyA Spotter: predictor of poly(A) motifs within human genomic DNA sequences

Manal Kalkatawi et al.

BIOINFORMATICS (2012)

Article Physics, Mathematical

A Gibbs Approach to Chargaff's Second Parity Rule

Andrew Hart et al.

JOURNAL OF STATISTICAL PHYSICS (2012)

Article Multidisciplinary Sciences

An integrated encyclopedia of DNA elements in the human genome

Ian Dunham et al.

NATURE (2012)

Article Physics, Fluids & Plasmas

Poincare recurrences of DNA sequences

K. M. Frahm et al.

PHYSICAL REVIEW E (2012)

Article Multidisciplinary Sciences

On the origin of long-range correlations in texts

Eduardo G. Altmann et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Physics, Multidisciplinary

Multifractal information production of the human genome

C. Beck et al.

Article Statistics & Probability

Testing the Order of Markov Dependence in DNA Sequences

M. L. Menendez et al.

METHODOLOGY AND COMPUTING IN APPLIED PROBABILITY (2011)

Article Physics, Fluids & Plasmas

High-level organization of isochores into gigantic superstructures in the human genome

P. Carpena et al.

PHYSICAL REVIEW E (2011)

Review Physics, Multidisciplinary

Multi-scale coding of genomic information: From DNA sequence to genome structure and function

Alain Arneodo et al.

PHYSICS REPORTS-REVIEW SECTION OF PHYSICS LETTERS (2011)

Article Biochemical Research Methods

Genome analysis with inter-nucleotide distances

Vera Afreixo et al.

BIOINFORMATICS (2009)

Article Computer Science, Interdisciplinary Applications

Application of information-theoretic tests for the analysis of DNA sequences based on Markov chain models

N. Usotskaya et al.

COMPUTATIONAL STATISTICS & DATA ANALYSIS (2009)

Article Evolutionary Biology

Long-Range Bidirectional Strand Asymmetries Originate at CpG Islands in the Human Genome

Paz Polak et al.

GENOME BIOLOGY AND EVOLUTION (2009)

Article Biology

Long range clustering of oligonucleotides containing the CG signal

P. Katsaloulis et al.

JOURNAL OF THEORETICAL BIOLOGY (2009)

Article Multidisciplinary Sciences

Inverse Symmetry in Complete Genomes and Whole-Genome Inverse Duplication

Sing-Guan Kong et al.

PLOS ONE (2009)

Article Evolutionary Biology

Phylogenetic distribution of large-scale genome patchiness

Jose L. Oliver et al.

BMC EVOLUTIONARY BIOLOGY (2008)

Article Multidisciplinary Sciences

Nonequilibrium generation of information in copolymerization processes

David Andrieux et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Physics, Fluids & Plasmas

Power law exponents characterizing human DNA

A. Provata et al.

PHYSICAL REVIEW E (2007)

Article Biochemistry & Molecular Biology

The majority of recent short DNA insertions in the human genome are tandem duplications

Philipp W. Messer et al.

MOLECULAR BIOLOGY AND EVOLUTION (2007)

Article Multidisciplinary Sciences

Asymptotically increasing compliance of genomes with Chargaff's second parity rules through inversions and inverted transpositions

Guenter Albrecht-Buehler

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Article Physics, Multidisciplinary

Long-range correlations of RNA polymerase II promoter sequences across organisms

P. Katsaloulis et al.

PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS (2006)

Article Physics, Fluids & Plasmas

Compositional searching of CpG islands in the human genome -: art. no. 061925

PL Luque-Escamilla et al.

PHYSICAL REVIEW E (2005)

Article Statistics & Probability

Global Markov models for eukaryote nucleotide data

G Simons et al.

JOURNAL OF STATISTICAL PLANNING AND INFERENCE (2005)

Article Biochemistry & Molecular Biology

The biased distribution of alus in human isochores might be driven by recombination

M Hackenberg et al.

JOURNAL OF MOLECULAR EVOLUTION (2005)

Article Biochemistry & Molecular Biology

Whole-genome analysis of Alu repeat elements reveals complex evolutionary history

AL Price et al.

GENOME RESEARCH (2004)

Article Physics, Mathematical

Time-reversed dynamical entropy and irreversibility in Markovian random processes

P Gaspard

JOURNAL OF STATISTICAL PHYSICS (2004)

Article Genetics & Heredity

Quantifying intrachromosomal GC heterogeneity in prokaryotic genomes

P Bernaola-Galván et al.

Article Biology

Isochores merit the prefix 'iso'

W Li et al.

COMPUTATIONAL BIOLOGY AND CHEMISTRY (2003)

Article Physics, Multidisciplinary

Statistical distributions of oligonucleotide combinations: applications in human chromosomes 21 and 22

P Katsaloulis et al.

PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS (2002)

Article Genetics & Heredity

Isochore chromosome maps of the human genome

JL Oliver et al.

Article Physics, Multidisciplinary

Multifractal analysis of DNA sequences using a novel chaos-game representation

JM Gutiérrez et al.

PHYSICA A (2001)