4.6 Article

Fast single-molecule FRET spectroscopy: theory and experiment

Related references

Note: Only part of the references are listed.
Review Chemistry, Multidisciplinary

Shedding light on protein folding landscapes by single-molecule fluorescence

Priya R. Banerjee et al.

CHEMICAL SOCIETY REVIEWS (2014)

Article Chemistry, Multidisciplinary

Complex RNA Folding Kinetics Revealed by Single-Molecule FRET and Hidden Markov Models

Bettina G. Keller et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2014)

Article Biochemistry & Molecular Biology

Single-molecule spectroscopy of protein folding dynamics-expanding scope and timescales

Benjamin Schuler et al.

CURRENT OPINION IN STRUCTURAL BIOLOGY (2013)

Article Biochemistry & Molecular Biology

Force as a single molecule probe of multidimensional protein energy landscapes

Gabriel Zoldak et al.

CURRENT OPINION IN STRUCTURAL BIOLOGY (2013)

Article Multidisciplinary Sciences

Single-molecule fluorescence probes dynamics of barrier crossing

Hoi Sung Chung et al.

NATURE (2013)

Article Chemistry, Physical

Microsecond folding experiments and simulations: a match is made

M. B. Prigozhin et al.

PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2013)

Article Multidisciplinary Sciences

Single-molecule spectroscopy reveals photosynthetic LH2 complexes switch between emissive states

Gabriela S. Schlau-Cohen et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Review Biophysics

Single-Molecule Views of Protein Movement on Single-Stranded DNA

Taekjip Ha et al.

ANNUAL REVIEW OF BIOPHYSICS, VOL 41 (2012)

Article Chemistry, Physical

Likelihood functions for the analysis of single-molecule binned photon sequences

Irina V. Gopich

CHEMICAL PHYSICS (2012)

Article Biochemical Research Methods

A toolkit and benchmark study for FRET-restrained high-precision structural modeling

Stanislav Kalinin et al.

NATURE METHODS (2012)

Article Multidisciplinary Sciences

Quantifying internal friction in unfolded and intrinsically disordered proteins with single-molecule spectroscopy

Andrea Soranno et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Multidisciplinary Sciences

Theory of the energy transfer efficiency and fluorescence lifetime distribution in single-molecule FRET

Irina V. Gopich et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Multidisciplinary Sciences

Single-Molecule Fluorescence Experiments Determine Protein Folding Transition Path Times

Hoi Sung Chung et al.

SCIENCE (2012)

Article Chemistry, Physical

Maximum likelihood-based analysis of single-molecule photon arrival trajectories

Marta Hajdziona et al.

JOURNAL OF CHEMICAL PHYSICS (2011)

Article Biochemical Research Methods

A photoprotection strategy for microsecond-resolution single-molecule fluorescence spectroscopy

Luis A. Campos et al.

NATURE METHODS (2011)

Article Biochemical Research Methods

Visualizing a one-way protein encounter complex by ultrafast single-molecule mixing

Yann Gambin et al.

NATURE METHODS (2011)

Article Chemistry, Physical

Seeing the forest for the trees: fluorescence studies of single enzymes in the context of ensemble experiments

Yan-Wen Tan et al.

PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2011)

Article Chemistry, Physical

Diffusion models of protein folding

Robert B. Best et al.

PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2011)

Article Multidisciplinary Sciences

How Fast-Folding Proteins Fold

Kresten Lindorff-Larsen et al.

SCIENCE (2011)

Article Multidisciplinary Sciences

Single-molecule fluorescence spectroscopy maps the folding landscape of a large protein

Menahem Pirchi et al.

NATURE COMMUNICATIONS (2011)

Article Chemistry, Physical

Bayesian Detection of Intensity Changes in Single Molecule and Molecular Dynamics Trajectories

Daniel L. Ensign et al.

JOURNAL OF PHYSICAL CHEMISTRY B (2010)

Article Chemistry, Physical

FRET Efficiency Distributions of Multistate Single Molecules

Irina V. Gopich et al.

JOURNAL OF PHYSICAL CHEMISTRY B (2010)

Review Biochemistry & Molecular Biology

Multicolor single-molecule FRET to explore protein folding and binding

Yann Gambin et al.

MOLECULAR BIOSYSTEMS (2010)

Article Biochemistry & Molecular Biology

Chemical and physical aspects of charge transfer in the fluorescence intermittency of single molecules and quantum dots

Michel Orrit

PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES (2010)

Article Multidisciplinary Sciences

Conformational transitions in DNA polymerase I revealed by single-molecule FRET

Yusdi Santoso et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Multidisciplinary Sciences

Protein folded states are kinetic hubs

Gregory R. Bowman et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Multidisciplinary Sciences

Single-molecule spectroscopy of protein folding in a chaperonin cage

Hagen Hofmann et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Review Biochemical Research Methods

ACCURATE SINGLE-MOLECULE FRET STUDIES USING MULTIPARAMETER FLUORESCENCE DETECTION

Evangelos Sisamakis et al.

METHODS IN ENZYMOLOGY, VOL 475: SINGLE MOLECULE TOOLS, PT B: SUPER-RESOLUTION, PARTICLE TRACKING, MULTIPARAMETER, AND FORCE BASED METHODS (2010)

Article Chemistry, Physical

Protein dynamics from single-molecule fluorescence intensity correlation functions

Irina V. Gopich et al.

JOURNAL OF CHEMICAL PHYSICS (2009)

Article Chemistry, Physical

Decoding the Pattern of Photon Colors in Single-Molecule FRET

Irina V. Gopich et al.

JOURNAL OF PHYSICAL CHEMISTRY B (2009)

Article Multidisciplinary Sciences

Experimental determination of upper bound for transition path times in protein folding from single-molecule photon-by-photon trajectories

Hoi Sung Chung et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Multidisciplinary Sciences

Constructing the equilibrium ensemble of folding pathways from short off-equilibrium simulations

Frank Noe et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Chemistry, Multidisciplinary

A reducing and oxidizing system minimizes photobleaching and blinking of fluorescent dyes

Jan Vogelsang et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2008)

Review Biochemistry & Molecular Biology

How RNA unfolds and refolds

Pan T. X. Li et al.

ANNUAL REVIEW OF BIOCHEMISTRY (2008)

Review Biochemistry & Molecular Biology

Advances in single-molecule fluorescence methods for molecular biology

Chirlmin Joo et al.

ANNUAL REVIEW OF BIOCHEMISTRY (2008)

Review Biochemistry & Molecular Biology

Protein folding studied by single-molecule FRET

Benjamin Schuler et al.

CURRENT OPINION IN STRUCTURAL BIOLOGY (2008)

Article Chemistry, Physical

Analysis of the entire sequence of a single photon experiment on a flavin protein

James B. Witkoskie et al.

JOURNAL OF PHYSICAL CHEMISTRY B (2008)

Article Multidisciplinary Sciences

Illuminating the mechanistic roles of enzyme conformational dynamics

Jeffrey A. Hanson et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Chemistry, Physical

Single-molecule FRET with diffusion and conformational dynamics

Irina V. Gopich et al.

JOURNAL OF PHYSICAL CHEMISTRY B (2007)

Article Biochemical Research Methods

Detection and analysis of protein aggregation with confocal single molecule fluorescence spectroscopy

Frank Hillger et al.

JOURNAL OF FLUORESCENCE (2007)

Article Multidisciplinary Sciences

Ultrafast dynamics of protein collapse from single-molecule photon statistics

Daniel Nettels et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Multidisciplinary Sciences

Characterizing the unfolded states of proteins using single-molecule FRET spectroscopy and molecular simulations

Kusai A. Merchant et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Multidisciplinary Sciences

Mapping protein collapse with single-molecule fluorescence and kinetic synchrotron radiation circular dichroism spectroscopy

Armin Hoffmann et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Chemistry, Physical

Shot-noise limited single-molecule FRET histograms: Comparison between theory and experiments

Eyal Nir et al.

JOURNAL OF PHYSICAL CHEMISTRY B (2006)

Article Biochemical Research Methods

Nonblinking and longlasting single-molecule fluorescence imaging

Ivan Rasnik et al.

NATURE METHODS (2006)

Article Biophysics

Analysis of single-molecule FRET trajectories using hidden Markov modeling

Sean A. McKinney et al.

BIOPHYSICAL JOURNAL (2006)

Review Chemistry, Multidisciplinary

Single-molecule fluorescence studies of protein folding and conformational dynamics

Xavier Michalet et al.

CHEMICAL REVIEWS (2006)

Article Chemistry, Physical

Detection of intensity change points in time-resolved single-molecule measurements

LP Watkins et al.

JOURNAL OF PHYSICAL CHEMISTRY B (2005)

Article Statistics & Probability

Bayesian analysis of single-molecule experimental data

SC Kou et al.

JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES C-APPLIED STATISTICS (2005)

Article Chemistry, Physical

Theory of photon statistics in single-molecule Forster resonance energy transfer

I Gopich et al.

JOURNAL OF CHEMICAL PHYSICS (2005)

Review Biochemistry & Molecular Biology

The protein folding 'speed limit'

J Kubelka et al.

CURRENT OPINION IN STRUCTURAL BIOLOGY (2004)

Article Chemistry, Physical

From transition paths to transition states and rate coefficients

G Hummer

JOURNAL OF CHEMICAL PHYSICS (2004)

Article Chemistry, Physical

Single molecule kinetics. II. Numerical bayesian approach

JB Witkoskie et al.

JOURNAL OF CHEMICAL PHYSICS (2004)

Article Multidisciplinary Sciences

Single-molecule fluorescence resonance energy transfer reveals a dynamic equilibrium between closed and open conformations of syntaxin 1

M Margittai et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)

Article Chemistry, Physical

Maximum likelihood trajectories from single molecule fluorescence resonance energy transfer experiments

GF Schröder et al.

JOURNAL OF CHEMICAL PHYSICS (2003)

Article Chemistry, Physical

Single-macromolecule fluorescence resonance energy transfer and free-energy profiles

IV Gopich et al.

JOURNAL OF PHYSICAL CHEMISTRY B (2003)

Article Chemistry, Physical

Analysis of photon count data from single-molecule fluorescence experiments

T Burzykowski et al.

CHEMICAL PHYSICS (2003)