4.6 Article

Preparation of supramolecular chromophoric assemblies using a DNA duplex

Related references

Note: Only part of the references are listed.
Article Chemistry, Multidisciplinary

A polycation-chaperoned in-stem molecular beacon system

Hiroyuki Asanuma et al.

CHEMICAL COMMUNICATIONS (2012)

Article Chemistry, Multidisciplinary

In-Stem-Labeled Molecular Beacons for Distinct Fluorescent Color Readout

Carolin Holzhauser et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2011)

Article Chemistry, Multidisciplinary

Protease Probes Built from DNA: Multispectral Fluorescent DNA-Peptide Conjugates as Caspase Chemosensors

Nan Dai et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2011)

Review Chemistry, Multidisciplinary

J-Aggregates: From Serendipitous Discovery to Supramolecular Engineering of Functional Dye Materials

Frank Wuerthner et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2011)

Article Chemistry, Multidisciplinary

Fluorescent DNA chemosensors: identification of bacterial species by their volatile metabolites

Chi-Kin Koo et al.

CHEMICAL COMMUNICATIONS (2011)

Article Chemistry, Multidisciplinary

Differentiating a Diverse Range of Volatile Organic Compounds with Polyfluorophore Sensors Built on a DNA Scaffold

Florent Samain et al.

CHEMISTRY-A EUROPEAN JOURNAL (2011)

Article Chemistry, Multidisciplinary

A Cationic Dye Triplet as a Unique Glue That Can Connect Fully Matched Termini of DNA Duplexes

Hiromu Kashida et al.

CHEMISTRY-A EUROPEAN JOURNAL (2011)

Article Chemistry, Multidisciplinary

Differentiating between Fluorescence-Quenching Metal Ions with Polyfluorophore Sensors Built on a DNA Backbone

Samuel S. Tan et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2011)

Article Chemistry, Multidisciplinary

Single-Molecule Four-Color FRET Visualizes Energy-Transfer Paths on DNA Origami

Ingo H. Stein et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2011)

Article Chemistry, Organic

Cyclohexyl base pairs stabilize duplexes and intensify pyrene fluorescence by shielding it from natural base pairs

Hiromu Kashida et al.

ORGANIC & BIOMOLECULAR CHEMISTRY (2011)

Article Multidisciplinary Sciences

Multispectral labeling of antibodies with polyfluorophores on a DNA backbone and application in cellular imaging

Jia Guo et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Chemistry, Multidisciplinary

Polyfluorophores on a DNA Backbone: Sensors of Small Molecules in the Vapor Phase

Florent Samain et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2010)

Article Chemistry, Multidisciplinary

Coherent Quenching of a Fluorophore for the Design of a Highly Sensitive In-Stem Molecular Beacon

Yuichi Hara et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2010)

Article Chemistry, Multidisciplinary

A Light-Driven DNA Nanomachine for the Efficient Photoswitching of RNA Digestion

Mengguang Zhou et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2010)

Article Chemistry, Multidisciplinary

A Highly Sensitive, Excimer-Controlled Molecular Beacon

Robert Haener et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2010)

Article Chemistry, Multidisciplinary

DNA-polyfluorophore excimers as sensitive reporters for esterases and lipases

Nan Dai et al.

CHEMICAL COMMUNICATIONS (2010)

Review Chemistry, Multidisciplinary

Fluorescent Analogs of Biomolecular Building Blocks: Design, Properties, and Applications

Renatus W. Sinkeldam et al.

CHEMICAL REVIEWS (2010)

Review Chemistry, Multidisciplinary

Mechanisms for DNA Charge Transport

Joseph C. Genereux et al.

CHEMICAL REVIEWS (2010)

Review Chemistry, Multidisciplinary

Macromolecular multi-chromophoric scaffolding

Erik Schwartz et al.

CHEMICAL SOCIETY REVIEWS (2010)

Article Chemistry, Multidisciplinary

Insulator Base Pairs for Lighting-up Perylenediimide in a DNA Duplex

Hiromu Kashida et al.

CHEMISTRY-A EUROPEAN JOURNAL (2010)

Article Chemistry, Multidisciplinary

Non-covalent Versus Covalent Control of Self-Assembly and Chirality of Nile Red-modified Nucleoside and DNA

Reji Varghese et al.

CHEMISTRY-A EUROPEAN JOURNAL (2010)

Review Chemistry, Inorganic & Nuclear

Metal-base pairing in DNA

Guido H. Clever et al.

COORDINATION CHEMISTRY REVIEWS (2010)

Article Chemistry, Physical

An interstrand-wedged duplex composed of alternating DNA base pairs and covalently attached intercalators

Xingguo Liang et al.

JOURNAL OF MATERIALS CHEMISTRY (2010)

Article Chemistry, Multidisciplinary

Glowing Locked Nucleic Acids: Brightly Fluorescent Probes for Detection of Nucleic Acids in Cells

Michael E. Ostergaard et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2010)

Article Chemistry, Multidisciplinary

Accumulation of Fluorophores into DNA Duplexes To Mimic the Properties of Quantum Dots

Hiromu Kashida et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2010)

Article Chemistry, Multidisciplinary

Oligopyrenotides: Abiotic, Polyanionic Oligomers with Nucleic Acid-like Structural Properties

Robert Haener et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2010)

Article Chemistry, Organic

Red-white-blue emission switching molecular beacons: ratiometric multicolour DNA hybridization probes

Reji Varghese et al.

ORGANIC & BIOMOLECULAR CHEMISTRY (2010)

Article Chemistry, Multidisciplinary

Binaphthyl-DNA: Stacking and Fluorescence of a Nonplanar Aromatic Base Surrogate in DNA

Sven Hainke et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2009)

Article Chemistry, Multidisciplinary

In-Stem Molecular Beacon Containing a Pseudo Base Pair of Threoninol Nucleotides for the Removal of Background Emission

Hiromu Kashida et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2009)

Article Chemistry, Multidisciplinary

Duplex Stabilization and Energy Transfer in Zipper Porphyrin-DNA

ThaoNguyen Nguyen et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2009)

Article Chemistry, Multidisciplinary

Fluorescent Color Readout of DNA Hybridization with Thiazole Orange as an Artificial DNA Base

Sina Berndl et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2009)

Article Biochemical Research Methods

Modulation of pKa of Brooker's Merocyanine by DNA Hybridization

Hiromu Kashida et al.

BIOCONJUGATE CHEMISTRY (2009)

Review Chemistry, Multidisciplinary

C-Nucleosides: Synthetic Strategies and Biological Applications

Jan Stambasky et al.

CHEMICAL REVIEWS (2009)

Article Chemistry, Multidisciplinary

Polyfluorophore Labels on DNA: Dramatic Sequence Dependence of Quenching

Yin Nah Teo et al.

CHEMISTRY-A EUROPEAN JOURNAL (2009)

Article Chemistry, Multidisciplinary

2-Phenanthrenyl-DNA: Synthesis, Pairing, and Fluorescence Properties

Nikolay A. Grigorenko et al.

CHEMISTRY-A EUROPEAN JOURNAL (2009)

Article Chemistry, Multidisciplinary

DNA-Assisted Self-Assembly of Pyrene Foldamers

Robert Haner et al.

CHEMISTRY-A EUROPEAN JOURNAL (2009)

Review Chemistry, Organic

Rational Design of Functional DNA with a Non-Ribose Acyclic Scaffold

Hiromu Kashida et al.

CURRENT ORGANIC CHEMISTRY (2009)

Article Chemistry, Multidisciplinary

Positively Charged Base Surrogate for Highly Stable Base Pairing through Electrostatic and Stacking Interactions

Hiromu Kashida et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2009)

Article Chemistry, Multidisciplinary

Perylene bisimide dimers as fluorescent Glue for DNA and for base-mismatch detection

Daniela Baumstark et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2008)

Article Biochemistry & Molecular Biology

Spectroscopic properties of pyrene-containing DNA mimics

Florent Samain et al.

BIOORGANIC & MEDICINAL CHEMISTRY (2008)

Article Biochemistry & Molecular Biology

Pyrene-perylene as a FRET pair coupled to the N2 '-functionality of 2 '-amino-LNA

Dorthe Lindegaard et al.

BIOORGANIC & MEDICINAL CHEMISTRY (2008)

Article Biochemistry & Molecular Biology

Quenching of fluorescent nucleobases by neighboring DNA: The Insulator concept

James N. Wilson et al.

CHEMBIOCHEM (2008)

Article Chemistry, Multidisciplinary

Highly efficient quenching of excimer fluorescence by perylene diimide in DNA

Nicolas Bouquin et al.

CHEMICAL COMMUNICATIONS (2008)

Article Chemistry, Multidisciplinary

Solution structure of a DNA duplex containing a biphenyl pair

Zeena Johar et al.

CHEMISTRY-A EUROPEAN JOURNAL (2008)

Article Chemistry, Multidisciplinary

Highly Fluorescent Conjugated Pyrenes in Nucleic Acid Probes: (Phenylethynyl)pyrenecarbonyl-Functionalized Locked Nucleic Acids

Irina V. Astakhova et al.

CHEMISTRY-A EUROPEAN JOURNAL (2008)

Article Chemistry, Organic

Anthraquinones as artificial DNA building blocks

Nicolas Bouquin et al.

EUROPEAN JOURNAL OF ORGANIC CHEMISTRY (2008)

Article Chemistry, Organic

Thiazole orange and Cy3: Improvement of fluorescent DNA probes with use of short range electron transfer

Florian Menacher et al.

JOURNAL OF ORGANIC CHEMISTRY (2008)

Review Chemistry, Multidisciplinary

Charge-transfer and spin dynamics in DNA hairpin conjugates with perylenediimide as a base-pair surrogate

Tarek A. Zeidan et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2008)

Article Chemistry, Multidisciplinary

Pyrene-zipper array assembled via RNA duplex formation

Mitsunobu Nakamura et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2008)

Article Chemistry, Organic

Threoninol as a scaffold of dyes (threoninol-nucleotide) and their stable interstrand clustering in duplexes

Hiromu Kashida et al.

ORGANIC & BIOMOLECULAR CHEMISTRY (2008)

Article Chemistry, Organic

Supramolecular helical porphyrin arrays using DNA as a scaffold

Imenne Bouamaied et al.

ORGANIC & BIOMOLECULAR CHEMISTRY (2008)

Review Chemistry, Multidisciplinary

Extrinsic fluorescent dyes as tools for protein characterization

Andrea Hawe et al.

PHARMACEUTICAL RESEARCH (2008)

Review Chemistry, Multidisciplinary

DNA as supramolecular scaffold for porphyrin arrays on the nanorneter scale

Leslie-Anne Fendt et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2007)

Article Chemistry, Organic

Detection of genetic polymorphisms with high sensitivity by DNA-perylene conjugate

Hiromu Kashida et al.

TETRAHEDRON LETTERS (2007)

Article Chemistry, Organic

Oligodeoxyfluorosides: strong sequence dependence of fluorescence emission

James N. Wilson et al.

TETRAHEDRON (2007)

Article Chemistry, Multidisciplinary

Fluorescent DNA nanotags: Supramolecular fluorescent labels based on intercalating dye arrays assembled on nanostructured DNA templates

Andrea L. Benvin et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2007)

Article Chemistry, Multidisciplinary

Artificial DNAs based on alkynyl C-nucleosides as a superior scaffold for homo- and heteroexcimer emissions

Junya Chiba et al.

CHEMISTRY-A EUROPEAN JOURNAL (2007)

Article Chemistry, Organic

Pyrene aromatic arrays on RNA duplexes as helical templates

Mitsunobu Nakamura et al.

ORGANIC & BIOMOLECULAR CHEMISTRY (2007)

Article Chemistry, Multidisciplinary

Helical arrangement of interstrand stacked pyrenes in a DNA framework

Vladimir L. Malinovskii et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2007)

Article Chemistry, Multidisciplinary

Dissecting and reducing the heterogeneity of excited-state energy transport in DNA-Based photonic wires

Mike Heilemann et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2006)

Article Chemistry, Physical

Water-induced fluorescence quenching of mono- and dicyanoanilines

Juro Oshima et al.

CHEMICAL PHYSICS LETTERS (2006)

Article Multidisciplinary Sciences

Folding DNA to create nanoscale shapes and patterns

PWK Rothemund

NATURE (2006)

Article Chemistry, Multidisciplinary

Covalent incorporation of methyl red dyes into double-stranded DNA for their ordered clustering

H Kashida et al.

CHEMISTRY-A EUROPEAN JOURNAL (2006)

Article Chemistry, Multidisciplinary

Insertion of two pyrene moieties into oligodeoxyribonucleotides for the efficient detection of deletion polymorphisms

Hiromu Kashida et al.

CHEMICAL COMMUNICATIONS (2006)

Article Biochemistry & Molecular Biology

Nucleic acid visualization with UCSF chimera

GS Couch et al.

NUCLEIC ACIDS RESEARCH (2006)

Article Chemistry, Multidisciplinary

Structure-sensitive and self-assembled helical pyrene array based on DNA architecture

Elke Mayer-Enthart et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2006)

Article Biochemistry & Molecular Biology

A DNA mimic made of non-nucleosidic phenanthrene building blocks

SM Langenegger et al.

CHEMBIOCHEM (2005)

Article Chemistry, Multidisciplinary

Multilabeled pyrene-functionalized 2′-amino-LNA probes for nucleic acid detection in homogeneous fluorescence assays

PJ Hrdlicka et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2005)

Article Chemistry, Multidisciplinary

Helical pyrene-array along the outside of duplex RNA

M Nakamura et al.

CHEMICAL COMMUNICATIONS (2005)

Article Chemistry, Multidisciplinary

Photoregulation of RNA digestion by RNase H with azobenzene-tethered DNA

D Matsunaga et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2004)

Article Biochemistry & Molecular Biology

Oligonucleotide conjugates of Nile Red

IA Prokhorenko et al.

NUCLEOSIDES NUCLEOTIDES & NUCLEIC ACIDS (2004)

Article Chemistry, Multidisciplinary

Excimer formation by interstrand stacked pyrenes

SM Langenegger et al.

CHEMICAL COMMUNICATIONS (2004)

Article Chemistry, Multidisciplinary

Alternating hetero H aggregation of different dyes by interstrand stacking from two DNA-dye conjugates

H Kashida et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2004)

Review Chemistry, Multidisciplinary

DNA-templated assembly of helical cyanine dye aggregates: A supramolecular chain polymerization

KC Hannah et al.

ACCOUNTS OF CHEMICAL RESEARCH (2004)

Article Chemistry, Multidisciplinary

Modified DNA analogues that sense light exposure with color changes

JM Gao et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2004)

Article Chemistry, Physical

Photoinduced electron transfer between fluorescent dyes and guanosine residues in DNA-hairpins

T Heinlein et al.

JOURNAL OF PHYSICAL CHEMISTRY B (2003)

Article Chemistry, Multidisciplinary

DNA with hydrophobic base substitutes: A stable, zipperlike recognition motif based on interstrand-stacking interactions

C Brotschi et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2003)

Article Chemistry, Multidisciplinary

Libraries of composite polyfluors built from fluorescent deoxyribosides

JM Gao et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2002)

Article Chemistry, Multidisciplinary

H-aggregation of methyl reds by the hybridization of DNA-dye conjugates

H Asanuma et al.

CHEMISTRY LETTERS (2002)

Article Chemistry, Multidisciplinary

Triple fluorescence energy transfer in covalently trichromophore-labeled DNA

AK Tong et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2001)

Article Chemistry, Physical

Origin of the stabilization energy of perylene excimer as studied by fluorescence and near-IR transient absorption spectroscopy

R Katoh et al.

JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY A-CHEMISTRY (2001)

Review Chemistry, Multidisciplinary

Dynamics of photoinduced charge transfer and hole transport in synthetic DNA hairpins

FD Lewis et al.

ACCOUNTS OF CHEMICAL RESEARCH (2001)

Article Chemistry, Multidisciplinary

DNA-templated formation of a helical cyanine dye J-aggregate

MM Wang et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2000)

Article Chemistry, Multidisciplinary

Naphthalene- and perylene-based linkers for the stabilization of hairpin triplexes

S Bevers et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2000)

Review Chemistry, Multidisciplinary

Long-range charge transfer in DNA: Transient structural distortions control the distance dependence

GB Schuster

ACCOUNTS OF CHEMICAL RESEARCH (2000)