4.2 Review

Pathway analysis tools and toxicogenomics reference databases for risk assessment

Related references

Note: Only part of the references are listed.
Article Toxicology

Acute hepatotoxicity: A predictive model based on focused Illumina microarrays

Nadine Zidek et al.

TOXICOLOGICAL SCIENCES (2007)

Article Biochemistry & Molecular Biology

VisANT 3.0: new modules for pathway visualization, editing, prediction and construction

Zhenjun Hu et al.

NUCLEIC ACIDS RESEARCH (2007)

Article Biotechnology & Applied Microbiology

Towards zoomable multidimensional maps of the cell

Zhenjun Hu et al.

NATURE BIOTECHNOLOGY (2007)

Article Biochemistry & Molecular Biology

STRING 7 - recent developments in the integration and prediction of protein interactions

Christian von Mering et al.

NUCLEIC ACIDS RESEARCH (2007)

Review Pharmacology & Pharmacy

Systems biology, metabolic modelling and metabolomics in drug discovery and development

Douglas B. Kell

DRUG DISCOVERY TODAY (2006)

Article Biotechnology & Applied Microbiology

Evaluation of DNA microarray results with quantitative gene expression platforms

Roger D. Canales et al.

NATURE BIOTECHNOLOGY (2006)

Article Biotechnology & Applied Microbiology

Performance comparison of one-color and two-color platforms within the MicroArray Quality Control (MAQC) project

Tucker A. Patterson et al.

NATURE BIOTECHNOLOGY (2006)

Article Biotechnology & Applied Microbiology

Rat toxicogenomic study reveals analytical consistency across microarray platforms

Lei Guo et al.

NATURE BIOTECHNOLOGY (2006)

Review Biotechnology & Applied Microbiology

Modeling cellular machinery through biological network comparison

R Sharan et al.

NATURE BIOTECHNOLOGY (2006)

Article Multidisciplinary Sciences

Oncogenic pathway signatures in human cancers as a guide to targeted therapies

AH Bild et al.

NATURE (2006)

Article Biochemistry & Molecular Biology

Classification of a large microarray data set: Algorithm comparison and analysis of drug signatures

G Natsoulis et al.

GENOME RESEARCH (2005)

Article Pharmacology & Pharmacy

Mechanistic toxicogenomic analysis of WAY-144122 administration in Sprague-Dawley rats

RL Peterson et al.

TOXICOLOGY AND APPLIED PHARMACOLOGY (2004)

Article Environmental Sciences

Clofibrate-induced gene expression changes in rat liver: A cross-laboratory analysis using membrane cDNA arrays

VA Baker et al.

ENVIRONMENTAL HEALTH PERSPECTIVES (2004)

Article Multidisciplinary Sciences

A map of the interactome network of the metazoan C-elegans

SM Li et al.

SCIENCE (2004)

Article Biochemical Research Methods

CEBS object model for systems biology data, SysBio-OM

S Xirasagar et al.

BIOINFORMATICS (2004)

Article Environmental Sciences

The need to decide if all estrogens are intrinsically similar

JG Moggs et al.

ENVIRONMENTAL HEALTH PERSPECTIVES (2004)

Review Genetics & Heredity

Toxicogenomics and systems toxicology: Aims and prospects

MD Waters et al.

NATURE REVIEWS GENETICS (2004)

Review Pathology

Toxicoproteomics: Proteomics applied to toxicology and pathology

BA Wetmore et al.

TOXICOLOGIC PATHOLOGY (2004)

Article Biochemistry & Molecular Biology

Annotation transfer between genomes: Protein-protein interologs and protein-DNA regulogs

HY Yu et al.

GENOME RESEARCH (2004)

Review Biochemistry & Molecular Biology

Human and animal hepatocytes in vitro with extrapolation in vivo

PJ O'Brien et al.

CHEMICO-BIOLOGICAL INTERACTIONS (2004)

Article Biotechnology & Applied Microbiology

Development of public toxicogenomics software for microarray data management and analysis

WD Tong et al.

MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS (2004)

Article Biotechnology & Applied Microbiology

Applications of microarrays with toxicologically relevant genes (tox genes) for the evaluation of chemical toxicants in Sprague Dawley rats in vivo and human hepatocytes in vitro

LD Kier et al.

MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS (2004)

Article Multidisciplinary Sciences

A protein interaction map of Drosophila melanogaster

L Giot et al.

SCIENCE (2003)

Article Biochemical Research Methods

MedScan, a natural language processing engine for MEDLINE abstracts

S Novichkova et al.

BIOINFORMATICS (2003)

Article Multidisciplinary Sciences

The digital code of DNA

L Hood et al.

NATURE (2003)

Article Biochemistry & Molecular Biology

ArrayExpress - a public repository for microarray gene expression data at the EBI

A Brazma et al.

NUCLEIC ACIDS RESEARCH (2003)

Article Biotechnology & Applied Microbiology

MAPPFinder: using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray data

SW Doniger et al.

GENOME BIOLOGY (2003)

Review Medical Laboratory Technology

Initial responses to endotoxins and Gram-negative bacteria

D Heumann et al.

CLINICA CHIMICA ACTA (2002)

Review Pharmacology & Pharmacy

Toxicogenomics: a new revolution in drug safety

AL Castle et al.

DRUG DISCOVERY TODAY (2002)

Review Biochemistry & Molecular Biology

MINT: a Molecular INTeraction database

A Zanzoni et al.

FEBS LETTERS (2002)

Article Biotechnology & Applied Microbiology

Toxicogenomics and drug discovery: will new technologies help us produce better drugs?

R Ulrich et al.

NATURE REVIEWS DRUG DISCOVERY (2002)

Article Biochemistry & Molecular Biology

DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions

I Xenarios et al.

NUCLEIC ACIDS RESEARCH (2002)

Article Pharmacology & Pharmacy

Clustering of hepatotoxins based on mechanism of toxicity using gene expression profiles

JF Waring et al.

TOXICOLOGY AND APPLIED PHARMACOLOGY (2001)

Article Multidisciplinary Sciences

The protein-protein interaction map of Helicobacter pylori

JC Rain et al.

NATURE (2001)

Article Toxicology

Toxicogenomics-based discrimination of toxic mechanism in HepG2 human hepatoma cells

ME Burczynski et al.

TOXICOLOGICAL SCIENCES (2000)

Article Biochemistry & Molecular Biology

Functional discovery via a compendium of expression profiles

TR Hughes et al.