Journal
NUCLEOSIDES NUCLEOTIDES & NUCLEIC ACIDS
Volume 37, Issue 9, Pages 485-497Publisher
TAYLOR & FRANCIS INC
DOI: 10.1080/15257770.2018.1498512
Keywords
Z-DNA; 5-methylcytosine; NMR; circular dichroism; Z-DNA binding protein
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Funding
- Ratchadaphiseksomphot endowment fund
- TRF-OHEC-Chulalongkorn University [MRG5580178]
- Chiba Institute of Technology International Academic Fellowship Program for Cooperative Universities
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Attempting to elucidate biological significance of the left-handed Z-DNA is a research challenge due to Z-DNA potential role in many diseases. Discovery of Z-DNA binding proteins has ignited the interest in search for Z-DNA functions. Biosensor with Z-DNA forming probe can be useful to study the interaction between Z-DNA conformation and Z-DNA binding proteins. In this study, 5-methylcytosine (C-m) containing CG decamers were characterized for their suitability to form Z-DNA and to be used in Z-DNA forming probe. The 5-thiol oligonucleotide embedded with 5-(m)CG(m)CG(m)CG(m)CG(m) CG-3 was designed and developed as a potential Z-DNA forming probe for Z-DNA binding protein screening.
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