4.8 Article

The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification

Journal

NUCLEIC ACIDS RESEARCH
Volume 43, Issue D1, Pages D1099-D1106

Publisher

OXFORD UNIV PRESS
DOI: 10.1093/nar/gku950

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Funding

  1. US Department of Energy Office of Science, Biological and Environmental Research Program
  2. University of California, Lawrence Berkeley National Laboratory [DE-AC02-05CH11231]
  3. US Department of Energy

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The Genomes OnLine Database (GOLD; ext-link-type=uri xlink:href=http://www.genomesonline.org xlink:type=simple>http://www.genomesonline.org) is a comprehensive online resource to catalog and monitor genetic studies worldwide. GOLD provides up-to-date status on complete and ongoing sequencing projects along with a broad array of curated metadata. Here we report version 5 (v.5) of the database. The newly designed database schema and web user interface supports several new features including the implementation of a four level (meta)genome project classification system and a simplified intuitive web interface to access reports and launch search tools. The database currently hosts information for about 19 200 studies, 56 000 Biosamples, 56 000 sequencing projects and 39 400 analysis projects. More than just a catalog of worldwide genome projects, GOLD is a manually curated, quality-controlled metadata warehouse. The problems encountered in integrating disparate and varying quality data into GOLD are briefly highlighted. GOLD fully supports and follows the Genomic Standards Consortium (GSC) Minimum Information standards.

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