4.8 Article

Translation rate is controlled by coupled trade-offs between site accessibility, selective RNA unfolding and sliding at upstream standby sites

Related references

Note: Only part of the references are listed.
Article Chemistry, Multidisciplinary

Translation Enhancer Improves the Ribosome Liberation from Translation Initiation

Shuntaro Takahashi et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2013)

Article Biochemical Research Methods

Quantitative estimation of activity and quality for collections of functional genetic elements

Vivek K. Mutalik et al.

NATURE METHODS (2013)

Article Biochemistry & Molecular Biology

Comparison of mRNA features affecting translation initiation and reinitiation

Ilya A. Osterman et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Multidisciplinary Sciences

Composability of regulatory sequences controlling transcription and translation in Escherichia coli

Sriram Kosuri et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Review Biochemical Research Methods

Contextualizing context for synthetic biology - identifying causes of failure of synthetic biological systems

Stefano Cardinale et al.

BIOTECHNOLOGY JOURNAL (2012)

Article Biochemistry & Molecular Biology

Multiple factors dictate target selection by Hfq-binding small RNAs

Chase L. Beisel et al.

EMBO JOURNAL (2012)

Article Multidisciplinary Sciences

Heterogeneous pathways and timing of factor departure during translation initiation

Albert Tsai et al.

NATURE (2012)

Article Biotechnology & Applied Microbiology

Ribozyme-based insulator parts buffer synthetic circuits from genetic context

Chunbo Lou et al.

NATURE BIOTECHNOLOGY (2012)

Article Biochemistry & Molecular Biology

Rationally designed families of orthogonal RNA regulators of translation

Vivek K. Mutalik et al.

NATURE CHEMICAL BIOLOGY (2012)

Article Biochemistry & Molecular Biology

Real-time assembly landscape of bacterial 30S translation initiation complex

Pohl Milon et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2012)

Article Biochemistry & Molecular Biology

5′-UTR RNA G-quadruplexes: translation regulation and targeting

Anthony Bugaut et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Multidisciplinary Sciences

Fine-tuning gene networks using simple sequence repeats

Robert G. Egbert et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Multidisciplinary Sciences

Folding energy landscape of the thiamine pyrophosphate riboswitch aptamer

Peter C. Anthony et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Multidisciplinary Sciences

De novo automated design of small RNA circuits for engineering synthetic riboregulation in living cells

Guillermo Rodrigo et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Multidisciplinary Sciences

Ribosomal protein S1 unwinds double-stranded RNA in multiple steps

Xiaohui Qu et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Multidisciplinary Sciences

Dual-acting riboswitch control of translation initiation and mRNA decay

Marie-Pier Caron et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Multidisciplinary Sciences

Transcriptional pausing coordinates folding of the aptamer domain and the expression platform of a riboswitch

George A. Perdrizet et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Multidisciplinary Sciences

Entropic origin of Mg2+-facilitated RNA folding

Julie L. Fiore et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Multidisciplinary Sciences

Genetic switchboard for synthetic biology applications

Jarred M. Callura et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Review Biochemistry & Molecular Biology

Regulation by Small RNAs in Bacteria: Expanding Frontiers

Gisela Storz et al.

MOLECULAR CELL (2011)

Review Biochemistry & Molecular Biology

New insights into riboswitch regulation mechanisms

Laurene Bastet et al.

MOLECULAR MICROBIOLOGY (2011)

Article Biochemistry & Molecular Biology

EcoCyc: a comprehensive database of Escherichia coli biology

Ingrid M. Keseler et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Multidisciplinary Sciences

Quantifying the sequence-function relation in gene silencing by bacterial small RNAs

Yue Hao et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Multidisciplinary Sciences

Model-Driven Engineering of RNA Devices to Quantitatively Program Gene Expression

James M. Carothers et al.

SCIENCE (2011)

Article Biochemistry & Molecular Biology

Reprogramming bacteria to seek and destroy an herbicide

Joy Sinha et al.

NATURE CHEMICAL BIOLOGY (2010)

Review Biochemistry & Molecular Biology

A structural view of translation initiation in bacteria

A. Simonetti et al.

CELLULAR AND MOLECULAR LIFE SCIENCES (2009)

Article Biotechnology & Applied Microbiology

Automated design of synthetic ribosome binding sites to control protein expression

Howard M. Salis et al.

NATURE BIOTECHNOLOGY (2009)

Article Biochemical Research Methods

Design Principles for Riboswitch Function

Chase L. Beisel et al.

PLOS COMPUTATIONAL BIOLOGY (2009)

Article Biochemistry & Molecular Biology

Effect of Hfq on RprA-rpoS mRNA Pairing: Hfq-RNA Binding and the Influence of the 5′ rpoS mRNA Leader Region

Taylor Updegrove et al.

BIOCHEMISTRY (2008)

Article Multidisciplinary Sciences

Structure of the 30S translation initiation complex

Angelita Simonetti et al.

NATURE (2008)

Article Biochemistry & Molecular Biology

The Vienna RNA Websuite

Andreas R. Gruber et al.

NUCLEIC ACIDS RESEARCH (2008)

Article Biochemistry & Molecular Biology

Structured mRNAs regulate translation initiation by binding to the platform of the ribosome

Stefano Marzi et al.

Article Biochemistry & Molecular Biology

An antisense RNA inhibits translation by competing with standby ribosomes

Fabien Darfeuille et al.

MOLECULAR CELL (2007)

Article Biochemistry & Molecular Biology

A high-throughput screen for synthetic riboswitches reveals mechanistic insights into their function

Sean A. Lynch et al.

CHEMISTRY & BIOLOGY (2007)

Article Biochemistry & Molecular Biology

Unfolding of mRNA secondary structure by the bacterial translation initiation complex

SM Studer et al.

MOLECULAR CELL (2006)

Article Biochemistry & Molecular Biology

Translational standby sites: How ribosomes may deal with the rapid folding kinetics of mRNA

MH de Smit et al.

JOURNAL OF MOLECULAR BIOLOGY (2003)

Article Biochemistry & Molecular Biology

The path of messenger RNA through the ribosome

GZ Yusupova et al.

Article Biochemistry & Molecular Biology

Crystal structures of complexes of the small ribosomal subunit with tetracycline, edeine and IF3

M Pioletti et al.

EMBO JOURNAL (2001)

Review Biochemistry & Molecular Biology

Induced fit in RNA-protein recognition

JR Williamson

NATURE STRUCTURAL BIOLOGY (2000)

Article Multidisciplinary Sciences

A trans-acting RNA as a control switch in Escherichia coli:: DsrA modulates function by forming alternative structures

RA Lease et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)