Related references
Note: Only part of the references are listed.Comprehensive analysis of the HEPN superfamily: identification of novel roles in intra-genomic conflicts, defense, pathogenesis and RNA processing
Vivek Anantharaman et al.
BIOLOGY DIRECT (2013)
Repurposing CRISPR as an RNA-Guided Platform for Sequence-Specific Control of Gene Expression
Lei S. Qi et al.
CELL (2013)
Genome editing with RNA-guided Cas9 nuclease in Zebrafish embryos
Nannan Chang et al.
CELL RESEARCH (2013)
Genome engineering in Saccharomyces cerevisiae using CRISPR-Cas systems
James E. DiCarlo et al.
NUCLEIC ACIDS RESEARCH (2013)
CRISPR-Cas: Evolution of an RNA-based adaptive immunity system in prokaryotes
Eugene V. Koonin et al.
RNA BIOLOGY (2013)
The tracrRNA and Cas9 families of type II CRISPR-Cas immunity systems
Krzysztof Chylinski et al.
RNA BIOLOGY (2013)
RNA-Guided Human Genome Engineering via Cas9
Prashant Mali et al.
SCIENCE (2013)
Multiplex Genome Engineering Using CRISPR/Cas Systems
Le Cong et al.
SCIENCE (2013)
CRISPR-Cas systems target a diverse collection of invasive mobile genetic elements in human microbiomes
Quan Zhang et al.
GENOME BIOLOGY (2013)
Comparisons of clustered regularly interspaced short palindromic repeats and viromes in human saliva reveal bacterial adaptations to salivary viruses
David T. Pride et al.
ENVIRONMENTAL MICROBIOLOGY (2012)
Essential Features and Rational Design of CRISPR RNAs that Function with the Cas RAMP Module Complex to Cleave RNAs
Caryn R. Hale et al.
MOLECULAR CELL (2012)
A framework for human microbiome research
Barbara A. Methe et al.
NATURE (2012)
Structure, function and diversity of the healthy human microbiome
Curtis Huttenhower et al.
NATURE (2012)
HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment
Michael Remmert et al.
NATURE METHODS (2012)
The Pfam protein families database
Marco Punta et al.
NUCLEIC ACIDS RESEARCH (2012)
Cas9-crRNA ribonucleoprotein complex mediates specific DNA cleavage for adaptive immunity in bacteria
Giedrius Gasiunas et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
A Programmable Dual-RNA-Guided DNA Endonuclease in Adaptive Bacterial Immunity
Martin Jinek et al.
SCIENCE (2012)
Diverse CRISPRs Evolving in Human Microbiomes
Mina Rho et al.
PLOS GENETICS (2012)
Toxin-Antitoxin Systems in Bacteria and Archaea
Yoshihiro Yamaguchi et al.
ANNUAL REVIEW OF GENETICS, VOL 45 (2011)
Unification of Cas protein families and a simple scenario for the origin and evolution of CRISPR-Cas systems
Kira S. Makarova et al.
BIOLOGY DIRECT (2011)
Analysis of streptococcal CRISPRs from human saliva reveals substantial sequence diversity within and between subjects over time
David T. Pride et al.
GENOME RESEARCH (2011)
Integrative analysis of environmental sequences using MEGAN4
Daniel H. Huson et al.
GENOME RESEARCH (2011)
CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III
Elitza Deltcheva et al.
NATURE (2011)
Evolution and classification of the CRISPR-Cas systems
Kira S. Makarova et al.
NATURE REVIEWS MICROBIOLOGY (2011)
Interference by clustered regularly interspaced short palindromic repeat (CRISPR) RNA is governed by a seed sequence
Ekaterina Semenova et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
The PIN-domain ribonucleases and the prokaryotic VapBC toxin-antitoxin array
Vickery L. Arcus et al.
PROTEIN ENGINEERING DESIGN & SELECTION (2011)
Accelerated Profile HMM Searches
Sean R. Eddy
PLOS COMPUTATIONAL BIOLOGY (2011)
Evolutionary Dynamics of Clustered Irregularly Interspaced Short Palindromic Repeat Systems in the Ocean Metagenome
Valery A. Sorokin et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2010)
iDBPs: a web server for the identification of DNA binding proteins
Guy Nimrod et al.
BIOINFORMATICS (2010)
Subdivision of the MDR superfamily of medium-chain dehydrogenases/reductases through iterative hidden Markov model refinement
Joel Hedlund et al.
BMC BIOINFORMATICS (2010)
The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA
Josiane E. Garneau et al.
NATURE (2010)
I-TASSER: a unified platform for automated protein structure and function prediction
Ambrish Roy et al.
NATURE PROTOCOLS (2010)
CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea
Luciano A. Marraffini et al.
NATURE REVIEWS GENETICS (2010)
CRISPR/Cas, the Immune System of Bacteria and Archaea
Philippe Horvath et al.
SCIENCE (2010)
FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix
Morgan N. Price et al.
MOLECULAR BIOLOGY AND EVOLUTION (2009)
Invasive DNA, Chopped and in the CRISPR
Luciano A. Marraffini et al.
STRUCTURE (2009)
CRISPR-based adaptive and heritable immunity in prokaryotes
John van der Oost et al.
TRENDS IN BIOCHEMICAL SCIENCES (2009)
Cas6 is an endoribonuclease that generates guide RNAs for invader defense in prokaryotes
Jason Carte et al.
GENES & DEVELOPMENT (2008)
A novel family of sequence-specific endoribonucleases associated with the clustered regularly interspaced short palindromic repeats
Natalia Beloglazova et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2008)
CRISPR - a widespread system that provides acquired resistance against phages in bacteria and archaea
Rotem Sorek et al.
NATURE REVIEWS MICROBIOLOGY (2008)
Small CRISPR RNAs guide antiviral defense in prokaryotes
Stan J. J. Brouns et al.
SCIENCE (2008)
CRISPR Interference Limits Horizontal Gene Transfer in Staphylococci by Targeting DNA
Luciano A. Marraffini et al.
SCIENCE (2008)
Phage response to CRISPR-Encoded resistance in Streptococcus thermophilus
Helene Deveau et al.
JOURNAL OF BACTERIOLOGY (2008)
Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes
Ken Kurokawa et al.
DNA RESEARCH (2007)
CRISPR provides acquired resistance against viruses in prokaryotes
Rodolphe Barrangou et al.
SCIENCE (2007)
Crystal structure of the conserved hypothetical cytosolic protein Xcc0516 from Xanthomonas campestris reveals a novel quaternary structure assembled by five four-helix bundles
Li-Ying Lin et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2006)
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
Weizhong Li et al.
BIOINFORMATICS (2006)
A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes
DH Haft et al.
PLOS COMPUTATIONAL BIOLOGY (2005)
Defining the normal bacterial flora of the oral cavity
JA Aas et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2005)
MUSCLE: a multiple sequence alignment method with reduced time and space complexity
RC Edgar
BMC BIOINFORMATICS (2004)
The COG database: an updated version includes eukaryotes
RL Tatusov et al.
BMC BIOINFORMATICS (2003)
Cytoscape: A software environment for integrated models of biomolecular interaction networks
P Shannon et al.
GENOME RESEARCH (2003)
The TIGRFAMs database of protein families
DH Haft et al.
NUCLEIC ACIDS RESEARCH (2003)
An efficient algorithm for large-scale detection of protein families
AJ Enright et al.
NUCLEIC ACIDS RESEARCH (2002)
Identification of genes that are associated with DNA repeats in prokaryotes
R Jansen et al.
MOLECULAR MICROBIOLOGY (2002)
Bacterial diversity in human subgingival plaque
BJ Paster et al.
JOURNAL OF BACTERIOLOGY (2001)