Related references
Note: Only part of the references are listed.NPIDB: nucleic acid-protein interaction database
Dmitry D. Kirsanov et al.
NUCLEIC ACIDS RESEARCH (2013)
Rfam 11.0: 10 years of RNA families
Sarah W. Burge et al.
NUCLEIC ACIDS RESEARCH (2013)
Update on activities at the Universal Protein Resource (UniProt) in 2013
Rolf Apweiler et al.
NUCLEIC ACIDS RESEARCH (2013)
T box RNA decodes both the information content and geometry of tRNA to affect gene expression
Jason C. Grigg et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Automated classification of RNA 3D motifs and the RNA 3D Motif Atlas
Anton I. Petrov et al.
RNA (2013)
Crystal Structure of the 70S Ribosome Bound with the Q253P Mutant Form of Release Factor RF2
Natalia Santos et al.
STRUCTURE (2013)
Visualizing Group II Intron Catalysis through the Stages of Splicing
Marco Marcia et al.
CELL (2012)
RNA CoSSMos: Characterization of Secondary Structure Motifs-a searchable database of secondary structure motifs in RNA three-dimensional structures
Pamela L. Vanegas et al.
NUCLEIC ACIDS RESEARCH (2012)
MINAS-a database of Metal Ions in Nucleic AcidS
Joachim Schnabl et al.
NUCLEIC ACIDS RESEARCH (2012)
The Molecular Interactions That Stabilize RNA Tertiary Structure: RNA Motifs, Patterns, and Networks
Samuel E. Butcher et al.
ACCOUNTS OF CHEMICAL RESEARCH (2011)
Overview of the CCP4 suite and current developments
Martyn D. Winn et al.
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2011)
Understanding the transcriptome through RNA structure
Yue Wan et al.
NATURE REVIEWS GENETICS (2011)
R3D-BLAST: a search tool for similar RNA 3D substructures
Yun-Chen Liu et al.
NUCLEIC ACIDS RESEARCH (2011)
WebFR3D-a server for finding, aligning and analyzing recurrent RNA 3D motifs
Anton I. Petrov et al.
NUCLEIC ACIDS RESEARCH (2011)
ModeRNA: a tool for comparative modeling of RNA 3D structure
Magdalena Rother et al.
NUCLEIC ACIDS RESEARCH (2011)
MolProbity: all-atom structure validation for macromolecular crystallography
Vincent B. Chen et al.
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2010)
RNA FRABASE 2.0: an advanced web-accessible database with the capacity to search the three-dimensional fragments within RNA structures
Mariusz Popenda et al.
BMC BIOINFORMATICS (2010)
Scientific inquiry, inference and critical reasoning in the macromolecular crystallography curriculum
Bernhard Rupp
JOURNAL OF APPLIED CRYSTALLOGRAPHY (2010)
Sequence-structure relationships in RNA loops: establishing the basis for loop homology modeling
Christian Schudoma et al.
NUCLEIC ACIDS RESEARCH (2010)
Re-refinement from deposited X-ray data can deliver improved models for most PDB entries
Robbie P. Joosten et al.
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2009)
VARNA: Interactive drawing and editing of the RNA secondary structure
Kevin Darty et al.
BIOINFORMATICS (2009)
Infernal 1.0: inference of RNA alignments
Eric P. Nawrocki et al.
BIOINFORMATICS (2009)
FASTR3D: a fast and accurate search tool for similar RNA 3D structures
Chin-En Lai et al.
NUCLEIC ACIDS RESEARCH (2009)
Coarse-grained modeling of large RNA molecules with knowledge-based potentials and structural filters
Magdalena A. Jonikas et al.
RNA (2009)
From knotted to nested RNA structures: A variety of computational methods for pseudoknot removal
Sandra Smit et al.
RNA (2008)
Analysis and classification of RNA tertiary structures
Mira Abraham et al.
RNA (2008)
Ab initio RNA folding by discrete molecular dynamics: From structure prediction to folding mechanisms
Feng Ding et al.
RNA (2008)
RNAJunction: a database of RNA junctions and kissing loops for three-dimensional structural analysis and nanodesign
Eckart Bindewald et al.
NUCLEIC ACIDS RESEARCH (2008)
FR3D: finding local and composite recurrent structural motifs in RNA 3D structures
Michael Sarver et al.
JOURNAL OF MATHEMATICAL BIOLOGY (2008)
Automated extraction and classification of RNA tertiary structure cyclic motifs
Sebastien Lemieux et al.
NUCLEIC ACIDS RESEARCH (2006)
The building blocks and motifs of RNA architecture
Neocles B. Leontis et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2006)
Protein function prediction via graph kernels
KM Borgwardt et al.
BIOINFORMATICS (2005)
The Uppsala Electron-Density Server
GJ Kleywegt et al.
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2004)
SCOR: Structural Classification of RNA, version 2.0
M Tamura et al.
NUCLEIC ACIDS RESEARCH (2004)
The identification of novel RNA structural motifs using COMPADRES: an automated approach to structural discovery
LM Wadley et al.
NUCLEIC ACIDS RESEARCH (2004)
Tools for the automatic identification and classification of RNA base pairs
HW Yang et al.
NUCLEIC ACIDS RESEARCH (2003)
On the occurrence of the T-loop RNA folding motif in large RNA molecules
AS Krasilnikov et al.
RNA (2003)
Frequent occurrence of the T-loop RNA folding motif in ribosomal RNAs
U Nagaswamy et al.
RNA (2002)
Motif prediction in ribosomal RNAs - Lessons and prospects for automated motif prediction in homologous
NB Leontis et al.
BIOCHIMIE (2002)
The non-Watson-Crick base pairs and their associated isostericity matrices
NB Leontis et al.
NUCLEIC ACIDS RESEARCH (2002)
The Computational Crystallography Toolbox:: crystallographic algorithms in a reusable software framework
RW Grosse-Kunstleve et al.
JOURNAL OF APPLIED CRYSTALLOGRAPHY (2002)
The kink-turn: a new RNA secondary structure motif
DJ Klein et al.
EMBO JOURNAL (2001)
Quantitative analysis of nucleic acid three-dimensional structures
P Gendron et al.
JOURNAL OF MOLECULAR BIOLOGY (2001)
Share Paper
