4.8 Article

MATS: a Bayesian framework for flexible detection of differential alternative splicing from RNA-Seq data

Related references

Note: Only part of the references are listed.
Article Biochemistry & Molecular Biology

Conservation of an RNA regulatory map between Drosophila and mammals

Angela N. Brooks et al.

GENOME RESEARCH (2011)

Article Biochemistry & Molecular Biology

RNA sequencing reveals the role of splicing polymorphisms in regulating human gene expression

Emilie Lalonde et al.

GENOME RESEARCH (2011)

Article Biochemistry & Molecular Biology

Context-dependent robustness to 5′ splice site polymorphisms in human populations

Zhi-xiang Lu et al.

HUMAN MOLECULAR GENETICS (2011)

Letter Biotechnology & Applied Microbiology

Sequencing technology does not eliminate biological variability

Kasper D. Hansen et al.

NATURE BIOTECHNOLOGY (2011)

Review Genetics & Heredity

Functional consequences of developmentally regulated alternative splicing

Auinash Kalsotra et al.

NATURE REVIEWS GENETICS (2011)

Article Biochemistry & Molecular Biology

Ensembl 2011

Paul Flicek et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Multidisciplinary Sciences

Detection and Removal of Biases in the Analysis of Next-Generation Sequencing Reads

Schraga Schwartz et al.

PLOS ONE (2011)

Article Multidisciplinary Sciences

Widespread establishment and regulatory impact of Alu exons in human genes

Shihao Shen et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Review Biochemistry & Molecular Biology

DEGRADE, MOVE, REGROUP: signaling control of splicing proteins

Florian Heyd et al.

TRENDS IN BIOCHEMICAL SCIENCES (2011)

Article Biotechnology & Applied Microbiology

Improving RNA-Seq expression estimates by correcting for fragment bias

Adam Roberts et al.

GENOME BIOLOGY (2011)

Article Biochemistry & Molecular Biology

An ESRP-regulated splicing programme is abrogated during the epithelial-mesenchymal transition

Claude C. Warzecha et al.

EMBO JOURNAL (2010)

Article Biochemical Research Methods

Alternative expression analysis by RNA sequencing

Malachi Griffith et al.

NATURE METHODS (2010)

Article Biochemical Research Methods

Analysis and design of RNA sequencing experiments for identifying isoform regulation

Yarden Katz et al.

NATURE METHODS (2010)

Review Genetics & Heredity

Alternative splicing and evolution: diversification, exon definition and function

Hadas Keren et al.

NATURE REVIEWS GENETICS (2010)

Article Biochemistry & Molecular Biology

A two-parameter generalized Poisson model to improve the analysis of RNA-seq data

Sudeep Srivastava et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Biochemistry & Molecular Biology

Biases in Illumina transcriptome sequencing caused by random hexamer priming

Kasper D. Hansen et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Biochemistry & Molecular Biology

rQuant.web: a tool for RNA-Seq-based transcript quantitation

Regina Bohnert et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Multidisciplinary Sciences

Regulation of Alternative Splicing by Histone Modifications

Reini F. Luco et al.

SCIENCE (2010)

Article Biotechnology & Applied Microbiology

Modeling non-uniformity in short-read rates in RNA-Seq data

Jun Li et al.

GENOME BIOLOGY (2010)

Review Biochemistry & Molecular Biology

RNA and Disease

Thomas A. Cooper et al.

Article Biochemistry & Molecular Biology

ESRP1 and ESRP2 Are Epithelial Cell-Type-Specific Regulators of FGFR2 Splicing

Claude C. Warzecha et al.

MOLECULAR CELL (2009)

Review Genetics & Heredity

RNA-Seq: a revolutionary tool for transcriptomics

Zhong Wang et al.

NATURE REVIEWS GENETICS (2009)

Article Biotechnology & Applied Microbiology

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Ben Langmead et al.

GENOME BIOLOGY (2009)

Article Multidisciplinary Sciences

Alternative isoform regulation in human tissue transcriptomes

Eric T. Wang et al.

NATURE (2008)

Article Biochemical Research Methods

The UCSC Known Genes

F Hsu et al.

BIOINFORMATICS (2006)

Article Biotechnology & Applied Microbiology

Strengths and weaknesses of EST-based prediction of tissue-specific alternative splicing

S Gupta et al.

BMC GENOMICS (2004)

Article Multidisciplinary Sciences

SCNM1, a putative RNA splicing factor that modifies disease severity in mice

DA Buchner et al.

SCIENCE (2003)

Review Biochemistry & Molecular Biology

Tau gene mutations:: dissecting the pathogenesis of FTDP-17

EM Ingram et al.

TRENDS IN MOLECULAR MEDICINE (2002)

Article Biochemistry & Molecular Biology

Genome-wide detection of tissue-specific alternative splicing in the human transcriptome

Q Xu et al.

NUCLEIC ACIDS RESEARCH (2002)

Review Genetics & Heredity

Alternative splicing: increasing diversity in the proteomic world

BR Graveley

TRENDS IN GENETICS (2001)